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TGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgatgttatttccttatactaagccttattgatttggtgtcttctacttctgagctttaatctcaatccatgctattgctttcttatgcag
species | Zea mays |
transcript | GRMZM2G421857_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAGAGAAATEST: gi|149070206|gb|EE158608.2|EE158608
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAAT
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|211532178|gb|FL123452.1|FL123452
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAA-TTTACCATGEST: gi|211152796|gb|FL123506.1|FL123506
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|211529167|gb|FL123433.1|FL123433
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: ATGGGGAAAAATA-GT-ACATTGCACCAGCTGGCCAGTANCA-CCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGNCATAAAAAAGAAATTTACCATGEST: gi|31355789|gb|CD440146.1|CD440146
genomic: ATGGGGAAAA-TAAGTTACATTGCACCAGCTGGCCAGTA-CAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTATATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|211535168|gb|FL123457.1|FL123457
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: TATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTANCA-CCTGCAG GACACAGTGCTAGNATTGGAATTTCAGGGCATAAAAAAGAA-TTTACCATGEST: gi|148968185|gb|EE019478.2|EE019478
genomic: TATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTA-CAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|211156004|gb|FL123539.1|FL123539
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAAATTGGAATT-CAGGGCATAAAAAAGAA-TTTACCATEST: gi|148962822|gb|EE013742.2|EE013742
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAA-TTGGAATTTCAGGGCATAAAAAAGAAATTTACCAT
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|211535166|gb|FL123455.1|FL123455
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: TATGGGGAAAAATA-GTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGEST: gi|148966031|gb|EE016965.2|EE016965
genomic: TATGGGGAAAA-TAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|87152921|gb|DY397710.1|DY397710
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATEST: gi|211154396|gb|FL123515.1|FL123515
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCAT
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|6012344|gb|AW061700.1|AW061700
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CAGCTGGCCAGTACAACCTGCAG GACNCAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|211532167|gb|FL123441.1|FL123441
genomic: CAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|149098348|gb|EE184321.2|EE184321
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|148966043|gb|EE016977.2|EE016977
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|18654718|gb|BM499523.1|BM499523
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAAATGGAATTTCAGGGCATEST: gi|149095258|gb|EE180885.2|EE180885
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCAT
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|6636981|gb|AW261253.1|AW261253
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATGEST: gi|211541200|gb|FL123497.1|FL123497
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAAATTACCAATEST: gi|211541195|gb|FL123492.1|FL123492
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCA-T
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgat ... tcttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAAATTTACCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGCAGgttagttgatgttatttccttatactaagccttattgatttggtgtcttctacttctgagctttaatctcaatccatgctattgctttcttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG