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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAGATTACATTGCAACTCCAAAACCTAATGGCTACCAAAGCCTACACACAACAGTGATACCATTTTTAATGAGAgtatgtttcatttggaagttcaggtaatgctgcctactcatttgttaacttgaaactggcaaatatcaagcaatgaatgtatttcatcttgttgttgattgtgacttgtgtttaaaattccaactgtattgtag

Basic information

species Zea mays
transcript GRMZM2G416698_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G416698_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g22160.1 (Oryza sativa), 5'ss of exon 15
GTGGAAGATTACATTGCAACTCCAAAACCTAATGGCTACCAAAGCCTACACACAACAGTGATACCATTTTT-AATGAGAgtatgtttcatttggaagttcaggtaatgctg-cctactcatttgttaacttgaaactggcaaatatcaagcaatgaatgtatttcatcttgttgttgattgtgacttgtgtttaaaattccaactgtattgtag
  | |||||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||||||| || | ||      ||  |  | |  |    || |   ||| |  | || | || |  || |  |    | ||  | ||    || |  |||| ||||||||| ||
--GAAAGATTACATTGCAACCCCAAAGCCTAATGGATACCAAAGTCTACACACGACAGTGATACCATTTCTGAATGAGAGTATGTTCCATTTGGAAGTTCAGgtaatgttggcttagctgcctgccatttagctaaattcatactacaaactctcaa-gcatgtgctcattct----aatgcaagtttcactttatgttcctactgtattgcag

upper sequence: GRMZM2G416698_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT4G02260.3 (Arabidopsis thaliana), 5'ss of exon 15
GTGGAAGATTACATTGCAACTCCAAAACCTAATGGCTACCAAAGCCTACACACAACAGTGATACCATTTTTA-ATGAGAgtatgtttcatttggaagttcaggtaatgctgcctac--tcatttgtta-actt-----gaaactggcaaatatcaa-gcaat-gaatgta-tttcatcttgttgttgattgtgacttg-----tgtttaaaattccaactgtattgtag-------------------------
    |||||||||||||||| || || || ||||| ||||| ||||| || || || ||||| ||||| ||  |||||||||||||||   |||| ||||||||| |   |   |   || ||| | | | ||      |||  | | |  || |   |||| ||||    ||| |   | ||   | ||    | ||     | |||||||  |  | |  ||||                            
--AAAAGATTACATTGCAACCCCGAAGCCCAATGGATACCAGAGCCTCCATACTACTGTGATTCCATTCTTGTATGAGAGTATGTTTCGACTGGAGGTTCAGgtatttgagataaaaatcttttatcacagttcttagaaaaacgccgatgattagtacaattgaattcggttttagtattttaaaggttcaagcatggggaatatttaaaaggctgatttgattggttattaagactacatttttctctgcag

upper sequence: GRMZM2G416698_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 15
GTGGAAGATTACATTGCAACTCCAAAACCTAATGGCTACCAAAGCCTACACACAACAGTGATACCATTT-TTAATGAGAgtatgtttcatttggaagttcaggtaa--tgctgcctactcatttgttaacttgaaactggcaaatatcaagcaatgaatgtatttcatcttgttgttgattgtgacttgtgtttaaaattccaactgtattgtag
  | |||| || |||||||||||||||||||||||||| ||||| || || ||||| || || |||||| || ||||||| |||||||   ||||||||||||| |  |  ||  |  |||||  ||   ||   | ||  ||||      |  ||||| |  ||    |   | ||  || |   || | |||    ||  |||          
--GAAAGACTATATTGCAACTCCAAAACCTAATGGCTATCAAAGTCTCCATACAACTGTAATTCCATTTCTTTATGAGAGCATGTTTCGACTGGAAGTTCAGgtcagctcttggattttcattcttt--tttaccattgcaaaattctttcctttgaat-tcctttgcttgccttttttttttctttttttttttttgttgtaac----------

upper sequence: GRMZM2G416698_T02 (Zea mays), 5'ss of exon 7
lower sequence: EFJ23048 (Selaginella moellendorffii), 5'ss of exon 12
GTGGAAGATTACATTGCAACTCCAAAACCTAATGGCTACCAAAGCCTACACACAACAGTGATACCATTTTTAATGAGAgtatgtttcat-ttggaagttcaggtaat-----gctgcc-tactcatttgttaacttgaaactggcaaatatcaagcaatgaatgtatttcatcttgttgttgattgtgacttgtgtttaaaattccaactgtattgtag
  | |||| |||||||| || |||||||| |||||||||||||| |||||||| | ||| || ||||||      |    || ||||    ||||| |||||||  |     | |||  |  |  | | ||  ||| |||        |  ||                                                                  
--GAAAGACTACATTGCTACCCCAAAACCCAATGGCTACCAAAGTCTACACACTAAAGTCATCCCATTTGGTTCAAAGACATTTTTCCCGCTGGAAATTCAGgtgcttaatagttgctatgttggtctattttcttaaaaacttttgtttgcag-----------------------------------------------------------------

upper sequence: GRMZM2G416698_T02 (Zea mays), 5'ss of exon 7
lower sequence: EFJ30490 (Selaginella moellendorffii), 5'ss of exon 12
GTGGAAGATTACATTGCAACTCCAAAACCTAATGGCTACCAAAGCCTACACACAACAGTGATACCATTTTTAATGAGAgtatgtttcat-ttggaagttcaggtaat-----gctgcc-tactcatttgttaacttgaaactggcaaatatcaagcaatgaatgtatttcatcttgttgttgattgtgacttgtgtttaaaattccaactgtattgtag
  | |||| |||||||| || |||||||| |||||||||||||| |||||||| | ||| || ||||||      |    || ||||    ||||| |||||||  |     | |||  |  |  | | ||  ||| |||        |  ||                                                                  
--GAAAGACTACATTGCTACCCCAAAACCCAATGGCTACCAAAGTCTACACACTAAAGTCATCCCATTTGGTTCAAAGACATTTTTCCCACTGGAAATTCAGgtgcttaatagttgctatgttggtctattttcttaaaaacttttgtttgcag-----------------------------------------------------------------