1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CACTCCAACAAAAGGAAAAGGAGGTTACTGAAAGGTTTGAAGCAGCTAGGAAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAGgtattgcccaatcattttcttatcatatgaaattggtgacaatgaattaagttttttttctaggatgctatatcttatgtaaggacttgcaagatttctt...
species | Zea mays |
transcript | GRMZM2G416069_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAG GTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAAEST: gi|60394410|gb|DN227280.1|DN227280
genomic: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAGgtattgccca ... tggtgcttagGTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAA
EST: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAG GTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAAEST: gi|60349116|gb|DN216089.1|DN216089
genomic: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAGgtattgccca ... tggtgcttagGTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAA
EST: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAG GTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAAEST: gi|74034784|gb|DT535275.1|DT535275
genomic: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAGgtattgccca ... tggtgcttagGTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAA
EST: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAG GTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAAEST: gi|60348508|gb|DN215481.1|DN215481
genomic: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAGgtattgccca ... tggtgcttagGTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAA
EST: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAG GTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAAEST: gi|60348556|gb|DN215529.1|DN215529
genomic: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAGgtattgccca ... tggtgcttagGTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAA
EST: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAG GTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAA
genomic: AAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAGgtattgccca ... tggtgcttagGTATGAGCTGTTTATGGAGGCCTTCGATCACATATCTAAAGGCATCGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTCCAACAAAAGGAAAAGGAGGTTACTGAAAGGTTTGAAGCAGCTAGGAAAGAAGAACGAGAGATATCTGACAAATATAACTCAGTCAAGCAAAGGAGgtattgcccaatcattttcttatcatatgaaattggtgacaatgaattaagttttttttctaggatgctatatcttatgtaaggacttgcaagatttctt
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG