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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGAGGGGTACATATGGTAGCTTTGTTCAGATTGCAACCTGCCTTGGAATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATGgtgagaagctctcttttagtcctttacatgcctcttgaagttaatatttgtgaaatttatctgtaccaatgtttttattgccgttggcag

Basic information

species Zea mays
transcript GRMZM2G412899_T05
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G412899_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 7
CAGTGAGGGGTACATATGGTAGCTTTGTTCAGATTGCAACCTGCCTTGGAATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATGgtgagaagctctcttt--tagtcctttacatgcctcttgaagttaatatttgtgaaatttatctgtaccaatgtttttattgccgttggcag
|||||||||| |||||||| ||||||||||||||||||||||||||||||||  ||||||| || || |||||||||||||| || |||||||||||||||| ||| ||| ||||   |||  || ||||||  |  || ||||| ||  | |||  |  ||||     | | | |   ||||  ||  |||
CAGTGAGGGGCACATATGGGAGCTTTGTTCAGATTGCAACCTGCCTTGGAATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATGgttagatgctttcttctgtagctctctacatgttttgtgtagttagtaaatctga--tgcatcta----actttatcctttgctattaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78087261|gb|DV515654.1|DV515654
EST:     ATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATG                         GTGGAGAGTGTGTTTCTGGGTTGC
genomic: ATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATGgtgagaagct ... ccgttggcagGTGGAGAGTGTGTTTCTGGGTTGC
EST: gi|78109755|gb|DV528171.1|DV528171
EST:     ATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATG                         GTGGAGAGTGTGTTTCTG
genomic: ATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATGgtgagaagct ... ccgttggcagGTGGAGAGTGTGTTTCTG
EST: gi|149095879|gb|EE181538.2|EE181538
EST:     ATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATG                         GTGGAGAGTGTGTTTCTGGGTTGCCGTTATCCCAG
genomic: ATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATGgtgagaagct ... ccgttggcagGTGGAGAGTGTGTTTCTGGGTTGCCGTTATCCCAG
EST: gi|71766867|gb|DR964804.1|DR964804
EST:     ATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATG                         GTGGAGAGTGTGTTTCTGGGTTGCCGTTATCCCAGCAACTTTACAAGCTCT
genomic: ATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATGgtgagaagct ... ccgttggcagGTGGAGAGTGTGTTTCTGGGTTGCCGTTATCCCAGCAACTTTACAAGCTCT