Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGAGTGTGTTTCTGGGTTGCCGTTATCCCAGCAACTTTACAAGCTCTCGGTATGGAGTTTTGTGCTGAGAGCCCTCAGTGGCTTTATAAGgtacttctgctttgaacaatgaacattgcttgctttttatgctatgtttctgatttatcaagtcaaacatgcaatctctctgcatttgcgggggaatgct...

Basic information

species Zea mays
transcript GRMZM2G412899_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G412899_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 8
GTGGAGAGTGTGTTTCTGGGTTGCCGTTATCCCAGCAACTTTACAAGCTCTCGGTATGGAGTTTTGTGCTGAGAGCCCTCAGTGGCTTTATAAGgtacttctgctttgaacaatgaacattgcttgctttttatgctatgtt--tctgatttatcaagtcaaacatgcaatctctctgcatttgcgggggaatgct
|||||| ||||||||||||||||| | | | |||||||||||||||||||| || |||||||| |||||||||||||| |||||||| ||||||||   | |   |||    | |    ||  || || | |||| | |       | | | | |   |||    |   || |||||  | ||| |          
GTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAGgtgtgtttatcttgggggaagctgcttattttctatctatgatcttccaacttaaatcaccct-tcaggtgtctgat-tctctataattgtgcttcggcaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766867|gb|DR964804.1|DR964804
EST:     AAGCTCTCGGTATGGAGTTTTGTGCTGAGAGCCCTCAGTGGCTTTATAAG                         TGTGGAAAAATAAGTGAAGCAGAGATGCAATTTGAAAAGCTTTTAGGTCCC
genomic: AAGCTCTCGGTATGGAGTTTTGTGCTGAGAGCCCTCAGTGGCTTTATAAGgtacttctgc ... ttgaatgcagTGTGGAAAAATAAGTGAAGCAGAGATGCAATTTGAAAAGCTTTTAGGTCCC