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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTGTTAAGATGATTGAATATTGTATTGAGGATGATCAGAGGTTACTTGTATATGAATTTCATGGCACGGGGAAGTCTTGAAAATCATCTTTTCAGAAgtaagcaatcacctaatagagttaatgctttaagttgagtagatttagtgcctttattactaatttgtttccccacttaggcctaaccagtttttttctt...

Basic information

species Zea mays
transcript GRMZM2G410191_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G410191_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g07230.1 (Oryza sativa), 5'ss of exon 3
-ACCTTGTTAAGATGATTGAATATTGTATTGAGGATGATCAGAGGTTACTTGTATATGAATTTCATGGCACGGGGAAGTCTTGAAAATCATCTTTTCAGAAgtaagcaatcacctaatagagttaatgctttaagttgagtagatttagtgcctttattactaatttgtttc--cccacttaggcctaac--cagtttttttctt
 ||||||||||| |||||| ||| ||||| |||||||| || ||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||      || |   |    || |     |    ||  | | | |  |||| || ||  |||     ||  || |  |  |  ||  |||||  ||
CACCTTGTTAAGCTGATTGGATACTGTATCGAGGATGACCAAAGGTTGCTTGTATATGAATT-CATGGCCCGGGGAAGTCTTGAAAACCATCTTTTCAGAAgtaagcaatctt----tacaaccatcttttcagaagtaaacaatcaaatacatgcattagtatttctttttaattcaaataagattggcatcacatttttaatt