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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGTTGGGCTGATCTTGATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttcttactgatgatatgcaaatcattattctactccttacttcagtatttcttgtttagagactgaaataggtaaccttcatgaccagctaatt...

Basic information

species Zea mays
transcript GRMZM2G406603_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G406603_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA05G08060.2 (Glycine max), 5'ss of exon 5
CCTCGTTGGGCTGATCTTGATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttcttactgatgatatgcaaatcattattctactccttacttcagtatttcttgtttagagactgaaataggtaaccttcatgaccagctaatt
||| | |||  |||||| ||||| |||||||||||||| ||||| || |||||||  |||||||| |||||| ||||||   |  |  ||| | |||||  | |  | |||  |  | ||| | | |     |  |||||   |   | |   |               
CCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAGgtatttttct--gttcttgtattctaatca--actgcaatcc--atgttagt-tctttaaccaaaggactgtcttt--tgattgttgcag----------

upper sequence: GRMZM2G406603_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA05G08060.3 (Glycine max), 5'ss of exon 5
-------------------------------CCTCGTTGGGCTGATCTTGATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttcttactgatgatatgcaaatcattattctactccttacttcagtatttcttgtttagagactgaaataggtaaccttcatgaccagctaatt
                               ||| | |||  |||||| ||||| |||||||||||||| ||||| || |||||||  |||||||| |||||| ||||||   |  |  ||| | |||||  | |  | |||  |  | ||| | | |     |  |||||   |   | |   |               
TTAGTTTACATAATGCATCTTCATTTTGCAGCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAGgtatttttct--gttcttgtattctaatca--actgcaatcc--atgttagt-tctttaaccaaaggactgtcttt--tgattgttgcag----------

upper sequence: GRMZM2G406603_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA17G12940.2 (Glycine max), 5'ss of exon 6
CCTCGTTGGGCTGATCTTGATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttcttactgatgatatgcaaatcattattctactccttacttcagtatttcttgtttagagactgaaataggtaaccttcatgaccagctaatt
 || | |||  |||||| ||||| |||||||||||||| ||||| || |||||||  |||||||| |||||| ||||||   |  |  ||| | ||||   | |  | |||||  ||   | ||  |     |  |||||   |  | |   ||               
TCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGgtatttttct--gttcttgtattctaatc--cactgcagtccttgttt---tgttgttaaccaaaggactgtcctttg-attgtttgcag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32869619|gb|CF009301.1|CF009301
EST:     ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGCGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
genomic: ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcttcagAGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
EST: gi|166466077|gb|EG135583.1|EG135583
EST:     ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGCGCACCCATCTC
genomic: ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcttcagAGTGCACCCATCTC
EST: gi|71327050|gb|DR800172.1|DR800172
EST:     AATCAGCATGTCAATAATGTTAAATACATTGCGTGGGTTCTTGAG                         AGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
genomic: AATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcttcagAGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
EST: gi|24773338|gb|CA408592.1|CA408592
EST:     ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATCCTTGAG                         AGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
genomic: ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcttcagAGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
EST: gi|5915436|gb|AW053077.1|AW053077
EST:     ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
genomic: ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcttcagAGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
EST: gi|211441828|gb|FL296923.1|FL296923
EST:     ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGCGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
genomic: ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcttcagAGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
EST: gi|24961561|gb|CA483567.1|CA483567
EST:     ATATAAATCAGCATGTCAATAATGCTAAATACATTGCGCGGATCCTTGAG                         AGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
genomic: ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcttcagAGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
EST: gi|60356288|gb|DN223261.1|DN223261
EST:     ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG
genomic: ATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcttcagAGTGCACCCATCTCTATTCTTGAGAATCATGAGCTGGCGAGCATTGTGCTG