Sequence
atgc intronic sequence ATGC exonic sequenceCTCCGAGGATACATGGAATGAACCCCTTGGCCGTGGAACCGAGATAAGATTACATCTGCGAGATGAGGCCAAGGAGTACTTGGAAGAGGATAAGCTTAAGgtattgccatactcatttgtcttttatttgggttagttggtttctgctgcaaatatacaatggtcaccgaggttgttttagctgttatctgtatttcatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G399073_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 7
CTCCGAGGATACATGGAATGAACCCCTTGGCCGTGGAACCGAGATAAGATTACATCTGCGAGATGAGGCCAAGGAGTACTTGGAAGAGGATAAGCTTAAGgtattgccatactcatttgtcttttatttgggttagttggtttctgctgcaaatatacaatggtcaccgaggttgttttagctgttatctgtatttcatc--------
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CTCTGAGGATACATGGAATGAACCCCTGGGCCGTGGAACTGAAATAAGACTGCACCTCCGAGATGAAGCCAAGGAGTACGTGGAAGAAGACAAGCTAAAGgtattaccatcatta-----ctgtcaattggcttcat--gctgtgacatcaaatatgcgatatgcac-atgatagtggtacttggtgtctgcattgtctctgtgcttt
upper sequence: GRMZM2G399073_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA14G40320.4 (Glycine max), 5'ss of exon 7
CTCCGAGGATACATGGAATGAACCCCTTGGCCGTGGAACCGAGATAAGATTACATCTGCGAGATGAGGCCAAGGAGTACTTGGAAGAGGATAAGCTTAAGgtattgccatactcatttgtcttttatttgggttagttggtttctgctgcaaatatacaatggtc-accgaggttgttttagctgttatctgtatttcatc-
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TTCAGAAGATACATGGAATGAACCACTTGGACGAGGAACTGAGATTAGATTACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatcaacctatta--ccttaattatttataagttattcgagtttaaaatttcctgtcttctagtctccttcacatagtttacacttaggggtcattt
upper sequence: GRMZM2G399073_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 7
-CTCCGAGGATACATGGAATGAACCCCTTGGCCGTGGAACCGAGATAAGATTACATCTGCGAGATGAGGCCAAGGAGTACTTGGAAGAGGATAAGCTTAAGgtattgccatactcatttgtcttttatttgggttagttggtttctgctgcaaatatacaatggtcaccgaggttgttttagctgttatctgtatttcatc-----
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TTTCAGAAGATACATGGAATGAACCTCTAGGGCGTGGAACTGAGATTAGATTACACCTCAAGGAAGAGGCTGGGGAGTACTTGCAGGAGTCTAAACTGAAagtatgcaccaaattatttacctta-attattataagtt--tttctagtttaaaatttcat--gtcttctagtttccttcacataa-gtatacacttaggggtcgt
upper sequence: GRMZM2G399073_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT4G24190.2 (Arabidopsis thaliana), 5'ss of exon 7
CTCCGAGGATACATGGAATGAACCCCTTGGCCGTGGAACCGAGATAAGATTACATCTGCGAGATGAGGCCAAGGAGTACTTGGAAGAGGATAAGCTTAAGgtat-tgccatactcatttgtcttttatttgggttagttggtttctgctgcaaatatacaatg--gtcaccgaggttgttttagctgttatctgtatttcatc
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TTCCGAGGATACATGGAATGAGCCTCTTGGACGTGGAACCGAGATTAGATTACATCTTAGGGATGAAGCTGGCGAGTACCTAGAAGAAAGTAAACTTAAGgtgggtaatattttgataagaaagtaaatttctctt-ttgttacaaacctaaattaagcaatgcaaagaaccagaataacccagg-gtttgttgtagagaac-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149004856|gb|EE039364.2|EE039364EST: TACATCTGCGAGATGAGGCCAAGGAGTACTTGGAAGAGGATAAGCTTAAG GATTTGGTTAAGAAGTACTCTGAGTTCATCAACTTCCCTATCTATTT
genomic: TACATCTGCGAGATGAGGCCAAGGAGTACTTGGAAGAGGATAAGCTTAAGgtattgccat ... ttttatgtagGATTTGGTTAAGAAGTACTCTGAGTTCATCAACTTCCCTATCTATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCGAGGATACATGGAATGAACCCCTTGGCCGTGGAACCGAGATAAGATTACATCTGCGAGATGAGGCCAAGGAGTACTTGGAAGAGGATAAGCTTAAGgtattgccatactcatttgtcttttatttgggttagttggtttctgctgcaaatatacaatggtcaccgaggttgttttagctgttatctgtatttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT