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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAATTTAGAAAACCCAAATCTCTATCACTATGCACTTTTCTCTGATAATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcgtgtacttttagtcaattattcaattgcactccactaagtagtttctaatggtgatgtttggcatgtctttttcag

Basic information

species Zea mays
transcript GRMZM2G386971_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G386971_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os09g36190.1 (Oryza sativa), 5'ss of exon 7
TGAAAATTTAGAAAACCCAAATCTCTATCACTATGCACTTTTCTCTGATAATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcgtgtact--tttagtcaattattcaattgcactccactaagtagtttctaatggtgatgtttggcatgtctttttcag
 || || || ||||| ||| | ||||| ||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||  || | |   |||| |||| |    || ||   |     |      |||| |     |||| ||||||  | |||||||
CGAGAACTTGGAAAATCCAGAGCTCTACCACTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtagtttctgtcttcctctttaatcaaatgca-aactgtgataagtgataagtgttctgacaactatgtatggcataaccttttcag

upper sequence: GRMZM2G386971_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 8
---TGAAAATTTAGAAAACCCAAATCTCTATCACTATGCACTTTTCTCTGATAATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcgtgtacttttagtcaattattcaattgcactccactaagtagtttctaatggtgatgtttggcatgtctttttcag
    || || || ||||| ||| | ||||| || |||||||||||||| || ||||| |||||||| ||||||||   |||||||||||| ||||||||||||||| ||| ||| | | |||      ||| |||| ||||       |      ||||||  |  || | ||||||    |||||||
GAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGT---GAACTCAACCATCATGAATGCTAAGgtagttt-cgtcttccttt------ttaatcaagtgcaaagtgtgataattgttctaacagctatctatggcataatcttttcag

upper sequence: GRMZM2G386971_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA07G08910.1 (Glycine max), 5'ss of exon 5
TGAAAATTTAGAAAACCCAAATCTCTATCACTATGCACTTTTCTCTGATAATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcg-tgtacttttagtca-------at---tattcaattgcact----ccactaagtagtttctaatggtgatgtttggcatgtctttttcag
||| ||||| || || || | ||| |||||||| ||||| ||||| || ||||| ||||| || ||||||||||| |||||||| || |||||||| |||||   |||   |||  |||||  ||       ||   | | ||| |||| |    ||  | |    || | |||  || ||  | | | |        | 
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCAAAGgtgacttggactgtctttttaaccataccagtatgtgtgtgcaagtgcattgtttccttttatagattgcaaataatggtgccttgaaggagcaccaaaa

upper sequence: GRMZM2G386971_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G40260.1 (Glycine max), 5'ss of exon 8
TGAAAATTTAGAAAACCCAAATCTCTATCACTATGCACTTTTCTCTGATAATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcgtgtacttttagt---caattattcaattgcac-tccac-taagtagtttctaatggtgatgtttggcatgtctttttcag------------------------------------------------------------------------------------------------------------
||| ||||| || || || | ||||||||| ||||| || ||||| || ||||| ||||| || ||||||||||| |||||||| ||  ||||||| |||||   ||       ||||||     | | | |  |  ||||  || |  ||  || | | | ||   |||| |    |  |  |  |                                                                                                               
TGAGAATTTGGAGAATCCTAGTCTCTATCATTATGCCCTGTTCTCGGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTGTGAATGCAAAGgtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcag

upper sequence: GRMZM2G386971_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
TGAAAATTTAGAAAACCCAAATCTCTATCACTATGCACTTTTCTCTGATAATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcg-tgtacttttagtca----attattcaattgcac-tccactaagtagtttctaatggtgatgtttggcatgtctttttcag--------------------------------------------------------------------------------------------------
||| ||||| || || || | ||| |||||||| ||||| ||||| |||||||| ||||| || ||||||||||| |||||||| || ||||||||||||||   ||| | |||  |||||  ||    | ||||    ||||  | || |   |  |||   |   ||    |  |  || |||   ||                                                                                                   
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag

upper sequence: GRMZM2G386971_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G45750.1 (Glycine max), 5'ss of exon 7
TGAAAATTTAGAAAACCCAAATCTCTATCACTATGCACTTTTCTCTGATAATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcg-tgtacttttagtcaattattcaattgcactccactaagtagt--------ttctaatggtgatgtttggcatgt-ctttttcag--------------------------------------------------------------------------------------------------------
||| ||||| || || || | ||||||||| ||||| || ||||| || ||||| ||||| || ||||||||||| |||||||||||  ||||||| |||||   |||   |||  ||||    |    |     || ||    ||   ||||        || ||  | |||||  |    ||| |||   | |                                                                                                        
TGAGAATTTGGAGAATCCTAGTCTCTATCATTATGCCCTGTTCTCGGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACCATTGTGAATGCAAAGgtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtag

upper sequence: GRMZM2G386971_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv15s0048g01300.t01 (Vitis vinifera), 5'ss of exon 8
TGAAAATTTAGAAAACCCAAATCTCTATCACTATGCACTTTTCTCTGATAATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgt-attttgcgtgtacttttagtcaat-------tattcaattgcactccactaagtagtttctaatggtgatgtttggcatgtctttttcag-------
||| ||||| ||||| |||||||| || || ||||| || |||||||||||||| ||||| || || |||||||| |||||||||||  ||||||| ||||| |  | | |  |   |||| |  ||       | || || ||  || |      |||  |  ||     |   || | ||  | |  |          
TGAGAATTTGGAAAATCCAAATCTTTACCATTATGCTCTCTTCTCTGATAATGTATTGGCTGCTTCAGTTGTTGTCAACTCAACCATCTTGAATGCCAAGgtgaagtggtggatttatttactttatactagcatctttaagtgatcttcttatcctagacttaaaacaccagtattagtatcccctaatttatctacat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558802|gb|CA831037.1|CA831037
EST:     ATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAG                         GAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGA
genomic: ATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcg ... tctttttcagGAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGA
EST: gi|67031422|gb|CO460171.1|CO460171
EST:     ATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAG                         GAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGA
genomic: ATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcg ... tctttttcagGAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGA
EST: gi|87156097|gb|DY400886.1|DY400886
EST:     ATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAG                         GAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGA
genomic: ATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcg ... tctttttcagGAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGA
EST: gi|22472940|gb|BU037420.1|BU037420
EST:     ATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAG                         GAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGA
genomic: ATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcg ... tctttttcagGAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGA