1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgcattggcttaaatcgaacttgatttttttgtcatggtaaacactttattatttttttttaaaaaaaaatcacgcgataacttgaggcatggtgaattacag
species | Zea mays |
transcript | GRMZM2G374779_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|32827255|gb|CD966933.1|CD966933
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: GATCTNACTCAGACCATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|71763069|gb|DR961006.1|DR961006
genomic: GATCT-ACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|33092681|gb|CF052675.1|CF052675
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTANGT-CAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|71311445|gb|DR792068.1|DR792068
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|24764991|gb|CA400152.1|CA400152
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|71331117|gb|DR802384.1|DR802384
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|17930445|gb|BM267405.1|BM267405
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACATAGTGGCTACCTCAAAATCCCAACTEST: gi|24768117|gb|CA403246.1|CA403246
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|32934679|gb|CF039491.1|CF039491
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|76925921|gb|DV170650.1|DV170650
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|78544411|gb|DV621909.1|DV621909
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAAATEST: gi|60353563|gb|DN220536.1|DN220536
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|32827355|gb|CD967033.1|CD967033
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: GATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|74241744|gb|DT649658.1|DT649658
genomic: GATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTEST: gi|20802390|gb|BQ293440.1|BQ293440
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgcattggcttaaatcgaacttgatttttttgtcatggtaaacactttattatttttttttaaaaaaaaatcacgcgataacttgaggcatggtgaattacag
- - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - GAGATC