Sequence
atgc intronic sequence ATGC exonic sequenceACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 1
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatacttattttcatttagtactaaaaatgtt-tagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag
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ACTACTGGAGTTCTGTTGCGGAGATTGCTGGTGGATAGAAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAGCGTGGCATGAATGAAGgtctgcaatcgtcataaaataaataaatctgcattcaaaaagttatagctagacactcaggtagacgatttcatgctgaatatttttgtatttttgtgctag
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 7
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcat-tagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag
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ACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGgtagctaaataattgt-tttattccaattttctattttatatgatacttacc--actggttttcacatgtcag-----------------------------
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G05480.1 (Glycine max), 5'ss of exon 7
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttg-taaatttatgctaatcttttttgtgtctttgtgctag
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ACCACGGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAACGAAGgtagata-----aataactgttttacttcaattttc----tattttatatgatacttacccctggttttcccatgtcag-----------------------
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 7
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag
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ACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtaaaatgtggac---ttgatgttctgtttttccttgagaaga--ggaaatgtgatttcttaccatgatacatgtttgattccag----------------
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 6
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatact---tattttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag
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ACTACTGGCATATTATTGAGAAGATTACTTGTTGACAGAAATTTGAAGGGTGTAACTCATGTTATCGTCGATGAGATTCATGAACGTGGAATGAATGAAGgtaatattcaaattgactgaatgtcattatttggtgtttcaatttcttatggtagtctgcatttatttcag---------------------------------
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
lower sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag
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ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaag-----gttctttatttctcaaaaccgtgctgagcgtggtc-----ttttttctttctcag------------------------------------
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
lower sequence: EFJ19043 (Selaginella moellendorffii), 5'ss of exon 7
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag
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ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaag-----gttctttatgtctcaaaaccgtgctgagcgtggtc-----ttttttctttctcag------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31351858|gb|CD436215.1|CD436215EST: GAGGCATGAATGAAG ATTTTCTTCTTATTGTCTTAAAGGATCTTCTTCCACGTCGCCCTGAGCTGA
genomic: GAGGCATGAATGAAGgtctgcatta ... tttgtgctagATTTTCTTCTTATTGTCTTAAAGGATCTTCTTCCACGTCGCCCTGAGCTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG