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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACGAAGTGAAAGAACTGCTGCCTGAAGAAGCCGGAACCTTGTTCACTAACGCGGACGTTAAAATGTCTGAAATATTCTCATCAGTTCTTTCTGTTGATgtgagtgctgctttttttttgttttttttacattgcaaatggtgtcgcaaagcacataatccgttttgagcgcccataggaatgaatacctgcgccctgcag

Basic information

species Zea mays
transcript GRMZM2G372877_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G372877_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g40570.1 (Oryza sativa), 5'ss of exon 7
AGACGAAGTGAAAGAACTGCTGCCTGAAGAAGCCGGAACCTTGTTCACTAACGCGGACGTTAAAATGTCTGAAATATTCTCATCAGTTCTTTCTGTTGATgtgagtgctgctttttttttg---ttttttttacattgcaaatggtg---tcgcaaagcacataatccgttttgagcgcccataggaatgaatacctgcgccctgcag
   |||    |||||||| | ||  |||||||  |||||||| || ||  | |  || || ||||||||||||||||||||||| |  || |||||||||||||||| |  |   |||      |  |  ||    |  | | | ||   |  |  | || |||||| ||||||||| ||| || ||||||||   |||    | |||
GTCCGATACCAAAGAACTCCAGCTCGAAGAAGGTGGAACCTTATTTACCCATGAAGATGTCAAAATGTCTGAAATATTCTCATCGGCCCTCTCTGTTGATgtgagtgtttttacctttgcaagctcatgcttgagcttgacacgatgcgttttcgcaacatataatctgttttgagctccc-tacgaatgaatgtttgcatt-tacag