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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGACCATAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggttattcttgaaggtttgatttagttttcttgtgtgagatatgaactatgatcattcagagtgaagatttctgtgttcttaaatatgctcga...

Basic information

species Zea mays
transcript GRMZM2G366935_T08
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 7
GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGACCATAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggttattcttgaaggtttgatttagttt--tcttgtgtgagatatgaactatgatcattcagagtgaagatttctgtgttcttaaatatgctcga---
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| || |||||||| ||| ||| ||||| |||| | || | ||| | | ||||| || |||| || | ||||||| |
GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGgtaaattggttatcttttaaggtttgcttttattttatcttgcttgagtt-tggaatatccttgt----gatgaaggttaatgtggcctcgagtatgctccaatg

upper sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G08480.1 (Glycine max), 5'ss of exon 8
GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGACCATAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggt-tattcttgaaggtttgatttagttttcttgtgtgagatatgaactatg--atcattcagagtgaagatttctgtgttcttaaatatgctcga
|| || |||||||| |||||||||||||| || | |||||||||| | |||| ||| ||||||||||| ||||||||||| || || || || || ||||||| | || | | ||| | | |||| ||||| | || || || | | | | | | | || ||| | |
GCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGgtaactaagtatggttttggctgccaagaat-gtttacttgtttttctattgccctgtgtaagtgtgtaacatagaaaatatatggtgcttgggaacgaaa--

upper sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 8
GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGACCATAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggttattcttgaaggtttgatttagttttcttgtgtgagatatgaac-tatgatcattcagagtgaagatttctgtgttcttaaatatgctcga---
|| || |||||||| |||||||||||||| || | |||||||||| |||||| ||| |||||||| || ||||||||| | ||||| || | || ||||||| | ||||| | || || || || | | ||| | | ||| | | || |||| || |||| || | || | |
GCAATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAACCATAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAGgtaact-agttat-cgtgttggcaaaatacagatctgttgcttatgttatttccgtttgtgtattct--gtcctcgtttcaaccacacaaattctggtggttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32834578|gb|CD974256.1|CD974256
EST:     TAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAG                         GTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
genomic: TAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggt ... tctattgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
EST: gi|76915209|gb|DV165882.1|DV165882
EST:     TAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAG                         GTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
genomic: TAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggt ... tctattgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG