1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctctgctcagttttctcacttttttttcctagtaccagtctggtaattatttttctaacatcacactttttttag
species | Zea mays |
transcript | GRMZM2G366935_T07 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCT GGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATGEST: gi|76915207|gb|DV165881.1|DV165881
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctc ... ctttttttagGGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATG
EST: GTGATATTTGGAGTGTGGGCTGTATTTTTGTTGAACTATGCTTT GGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATGEST: gi|24765506|gb|CA400665.1|CA400665
genomic: GTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctc ... ctttttttagGGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATG
EST: TACCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCT GGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATGEST: gi|21331443|gb|BQ486824.1|BQ486824
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctc ... ctttttttagGGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATG
EST: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTCGTTGAACTATGCTCT GGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATGEST: gi|71439614|gb|DR820664.1|DR820664
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctc ... ctttttttagGGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATG
EST: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCT GGGGAAGCATTGTTTCAGACACATGAGAATCTGGGACACCTAGCAATGATGEST: gi|71426269|gb|DR807319.1|DR807319
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctc ... ctttttttagGGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATG
EST: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCT GGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATGEST: gi|60345840|gb|DN212813.1|DN212813
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctc ... ctttttttagGGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATG
EST: TACCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCT GGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATGEST: gi|74242829|gb|DT650743.1|DT650743
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctc ... ctttttttagGGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATG
EST: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCT GGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATGEST: gi|71775054|gb|DR972932.1|DR972932
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctc ... ctttttttagGGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATG
EST: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCT GGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATG
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctc ... ctttttttagGGGGAAGCATTGTTTCAGACACATGAGAATCTGGAACACCTAGCAATGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCTgttagatctctgctcagttttctcacttttttttcctagtaccagtctggtaattatttttctaacatcacactttttttag
- - - - - - - - - - - - - - TTGGAG