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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGACCATAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggttattcttgaaggtttgatttagttttcttgtgtgagatatgaactatgatcattcagagtgaagatttctgtgttcttaaatatgctcga...

Basic information

species Zea mays
transcript GRMZM2G366935_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 7
GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGACCATAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggttattcttgaaggtttgatttagttt--tcttgtgtgagatatgaactatgatcattcagagtgaagatttctgtgttcttaaatatgctcga---
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||  || |||||||| |||  |||  |||||  |||| | || | |||  |  |      ||||| ||  ||||  ||  | ||||||| |   
GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGgtaaattggttatcttttaaggtttgcttttattttatcttgcttgagtt-tggaatatccttgt----gatgaaggttaatgtggcctcgagtatgctccaatg

upper sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G08480.1 (Glycine max), 5'ss of exon 8
GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGACCATAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggt-tattcttgaaggtttgatttagttttcttgtgtgagatatgaactatg--atcattcagagtgaagatttctgtgttcttaaatatgctcga
|| || |||||||| |||||||||||||| || | |||||||||| | |||| ||| ||||||||||| ||||||||||| || || || || ||  ||||||| |  || |  | |||   |       | |||| ||||| |      ||  || ||  |   |  |   |  | | |     || |||    | |     
GCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGgtaactaagtatggttttggctgccaagaat-gtttacttgtttttctattgccctgtgtaagtgtgtaacatagaaaatatatggtgcttgggaacgaaa--

upper sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 8
GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGACCATAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggttattcttgaaggtttgatttagttttcttgtgtgagatatgaac-tatgatcattcagagtgaagatttctgtgttcttaaatatgctcga---
|| || |||||||| |||||||||||||| || | |||||||||| |||||| ||| |||||||| || ||||||||| | ||||| ||  | ||  ||||||| |  ||||| | ||  ||    ||  || | | |||  |  | |||   | | ||   ||||   ||     ||||         || | || | |    
GCAATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAACCATAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAGgtaact-agttat-cgtgttggcaaaatacagatctgttgcttatgttatttccgtttgtgtattct--gtcctcgtttcaaccacacaaattctggtggttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24765506|gb|CA400665.1|CA400665
EST:     AATAATCTTAG                         GTTTAGGCTGGAGTTTACCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
genomic: AATAATCTTAGgtaatttggt ... tctattgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG