Sequence
atgc intronic sequence ATGC exonic sequenceTTCTGACAGTTCGGCAGGCAGCTCGCTGTTTCCTTGCCATCGCCGGGTACCAGAACCGCCTGCGCGCCCTAAGCTCCCTCTGGGTTTCTCGGCCTCGAGAgtaagcaccatgcagttccttcaactgtcagtcccccctagcttcagttggttggtttacgattgtatctaagctctagctgttgaaggcagtattcact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G366264_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g05680.1 (Oryza sativa), 5'ss of exon 12
TTCTGACAGTTCGGCAGGCAGCTCGCTGTTTCCTTGCCATCGCCGGGTACCAGAACCGCCTGCGCGCCCTAAGCTCCCTCTGGGTTTCTCGGCCTCGAGAgtaagcaccatgcagttccttcaactgtcagtcccccctagcttcagttggttggtttacgatt-gtatctaagctctagctgttgaaggcagtattcact---
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TTCTGACAATTAGGCAGGCAGCTCGATGTTTCTTGGCAATTGGCGAGTACCATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcaccatgctctagtcctacctgcaattaattctt---ttcctttctttattttatgataagcctcctacctgtagttgttgaaggtt-taatctctgat
upper sequence: GRMZM2G366264_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g05480.1 (Oryza sativa), 5'ss of exon 12
TTCTGACAGTTCGGCAGGCAGCTCGCTGTTTCCTTGCCATCGCCGGGTACCAGAACCGCCTGCGCGCCCTAAGCTCCCTCTGGGTTTCTCGGCCTCGAGAgtaagcaccatgcagttccttcaactgtcagtcccccctagcttcagttggttggtttacgattgtatctaagctctagctgttgaaggcagtattcact-----
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TTCTGACAGTCAGGCAGGCAGCTCGATGTTTCTTGGCCATTGGAGAGTACCATAATCGCCTCCGTGCCCTGAGCTCACTTTGGGCTTCTCGCCCTCGAGAgtaaaccccatgcctgtagttgattctt---tttttcctataaaaaagggatattctcctgctcatagtta--ttgtagttaatattttttacttttactagataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76012572|gb|DT939742.1|DT939742EST: CAGAACCGCCTGCGCGCCCTAAGCTCCCTCTGGGTTTCTCGGCCTCGAGA GATACTGGTTGCAGATGAAGGCGACTGTGGGGAGATGAGCGCTG
genomic: CAGAACCGCCTGCGCGCCCTAAGCTCCCTCTGGGTTTCTCGGCCTCGAGAgtaagcacca ... tggcgtgcagGATACTGGTTGCAGATGAAGGCGACTGTGGGGAGATGAGCGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTGACAGTTCGGCAGGCAGCTCGCTGTTTCCTTGCCATCGCCGGGTACCAGAACCGCCTGCGCGCCCTAAGCTCCCTCTGGGTTTCTCGGCCTCGAGAgtaagcaccatgcagttccttcaactgtcagtcccccctagcttcagttggttggtttacgattgtatctaagctctagctgttgaaggcagtattcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccct