1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGCAAGCCTTGGTCAAACATTACTTCGAGTGCAAAAGATTTTGTACAAAAATTACTAGTTAAGGATCCCCGTGCAAGACTAACTGCTGCACAGGCATTATgtatgtgactatgatccatcttgaaaaatacaaaaccattaaggtttgctaatatgatttgtttccctagtataactttagtaagagtgccatgatgtaa...
species | Zea mays |
transcript | GRMZM2G365035_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATCCCCGTGCAAGACTAACTGCTGCACAGGCATTAT CACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATAEST: gi|32840606|gb|CD980287.1|CD980287
genomic: GATCCCCGTGCAAGACTAACTGCTGCACAGGCATTATgtatgtgact ... ttttcttcagCACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATA
EST: ATTACTAGTTAAGGATCCCCGTGCAAGACTAACTGCTGCACAGGCATTAT CACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATAEST: gi|149043308|gb|EE047371.2|EE047371
genomic: ATTACTAGTTAAGGATCCCCGTGCAAGACTAACTGCTGCACAGGCATTATgtatgtgact ... ttttcttcagCACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATA
EST: CCCGTGGCAAGACTAACTGCTGCACAGGCATTAT CACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATAEST: gi|32798382|gb|CD950618.1|CD950618
genomic: CCCGT-GCAAGACTAACTGCTGCACAGGCATTATgtatgtgact ... ttttcttcagCACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATA
EST: GATCCCCGTGCAAGACTAACTGCTGCACAGGCATTAT CACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATAEST: gi|32799086|gb|CD951322.1|CD951322
genomic: GATCCCCGTGCAAGACTAACTGCTGCACAGGCATTATgtatgtgact ... ttttcttcagCACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATA
EST: GATCCCCGTGCAAGACTAACTGCTGCACAGGCATTAT CACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAGATACCCTTGGATAEST: gi|211516679|gb|FL422119.1|FL422119
genomic: GATCCCCGTGCAAGACTAACTGCTGCACAGGCATTATgtatgtgact ... ttttcttcagCACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATA
EST: ATTACTAGTTAAGGATCCCCGTGCAAGACTAACTGCTGCACAGGCATTAT CACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATAEST: gi|45567561|gb|CK985631.1|CK985631
genomic: ATTACTAGTTAAGGATCCCCGTGCAAGACTAACTGCTGCACAGGCATTATgtatgtgact ... ttttcttcagCACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATA
EST: ATTACTAGTTTAGGATCCCCGTGCAAGACTAACTGCTGCACAGGCATTAT CACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATAEST: gi|18660455|gb|BM500871.1|BM500871
genomic: ATTACTAGTTAAGGATCCCCGTGCAAGACTAACTGCTGCACAGGCATTATgtatgtgact ... ttttcttcagCACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATA
EST: ATTACTAGTTAAGGATCCCCGTGCAAGACTAACTGCTGCACAGGCATTAT CACATGATTGGGTGAGAGAAGGAGGAAEST: gi|32789508|gb|CD941744.1|CD941744
genomic: ATTACTAGTTAAGGATCCCCGTGCAAGACTAACTGCTGCACAGGCATTATgtatgtgact ... ttttcttcagCACATGATTGGGTGAGAGAAGGAGGAA
EST: CCCGTGCAAGACTAACTGCTGCACAGGCATTAT CACATGATTGAGTGAGAGAAGGAGNAAAGGCATCTGAAATACCCTTGGATA
genomic: CCCGTGCAAGACTAACTGCTGCACAGGCATTATgtatgtgact ... ttttcttcagCACATGATTGGGTGAGAGAAGGAGGAAAGGCATCTGAAATACCCTTGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAAGCCTTGGTCAAACATTACTTCGAGTGCAAAAGATTTTGTACAAAAATTACTAGTTAAGGATCCCCGTGCAAGACTAACTGCTGCACAGGCATTATgtatgtgactatgatccatcttgaaaaatacaaaaccattaaggtttgctaatatgatttgtttccctagtataactttagtaagagtgccatgatgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaata