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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCCATAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATATCTGGGACTACAATTGATGCGCATgtcaggttctgagttttgttacctgagtttgaaaatctatctaattctaatacctcataggacactaggtctctacttcatgcattagcagaactcaata...

Basic information

species Zea mays
transcript GRMZM2G362021_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G362021_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g29180.1 (Oryza sativa), 5'ss of exon 5
------GTTCCCATAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATATCTGGGACTACAATTGATGCGCATgtcaggttctgagt---tttgttacctgagtttgaaaatct-----atctaattctaatacctcataggacactaggtctctacttcatgcattagcagaactcaata
      ||||||  | |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||| || ||||| || |   |   |||  ||| | |  ||       |     ||  |||||||  | || ||    |  | |||  |  |   |||| ||| || ||||     
TGTCTGGTTCCCCCAACCAGCACCAAAGGATCACCCATGGCGATACATGCCTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagcttttatatatgttttctactttaacttagggcattggagcataaaattctagaatctgatt---ctgtgggtacccccacaatgctttaacaaaact-----

upper sequence: GRMZM2G362021_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 5
------GTTCCCATAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATATCTGGGACTACAATTGATGCGCATgtc---------aggttctgagttttgttacctgagtttgaaaatctat--ctaa-----ttctaatacctcataggacactaggtctctacttcatgcattagcagaactcaata-----
      |  |  | | ||||| |||||||| || || |||||||||||||| |||||||||||||| ||||| || ||||| || || |||||||| || ||          || ||||   |  |  | | | || ||     | | |  ||||     ||||   || | || | ||||||  |   || || || | | | |   |||   |      
TGTTTGGCCCATACAACCAGCTCCAAAGGACCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcattaagtttctatatcattattcattagcttagctttttgtgtctaagttctttctttcacttgatggaacactaattaattaattaatac-taaaccatacttgtttttcag

upper sequence: GRMZM2G362021_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G01210.4 (Glycine max), 5'ss of exon 5
------GTTCCCATAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATATCTGGGACTACAATTGATGCGCATgtc---------aggttctgagttttgttacctgagtttgaaaatctat--ctaa-----ttctaatacctcataggacactaggtctctacttcatgcattagcagaactcaata-----
      ||||||| | ||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||| || ||||| || || |||||||| || ||          || ||||   |  |  | | | || ||     | | |  ||||     ||||   || | || | ||||||  |   || || || | | | |   |||   |      
TGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcattaagtttctatatcattattcattagcttagctttttgtgtctaagttctttctttcacttgatggaacactaattaattaattaatac-taaaccatacttgtttttcag

upper sequence: GRMZM2G362021_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA13G23790.3 (Glycine max), 5'ss of exon 6
------GTTCCCATAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATATCTGGGACTACAATTGATGCGCATgtcaggttctgagttttgttacctgagtttgaaaatct--atctaa-ttctaatacctcataggacactaggtctctacttcatgcattagcagaactcaata--
      ||||||| ||||||| ||||||||||| || ||||| |||||||| |||||||||||||| ||||| || ||||| || || || ||||| || ||    ||   | || | |  |   || |||    | |  | |||| || |   || |  | | ||||||       || | | | || | |  ||||   |   
TGTTTGGTTCCCACAGCCAGCTCCAAAGGATCATCCATGGCGTTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgt--attttaaatttctatagcactagcttgcccttttttacctaagttatttcacttggtggaacacta-------acattaagaataaaccaaacttgttcag

upper sequence: GRMZM2G362021_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
------GTTCCCATAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATATCTGGGACTACAATTGATGCGCATgt---caggttctgagttttgttacctgagtttgaaaatctatctaattctaatac-ctcataggacactaggtctctacttcatgcattagcagaactcaata
      ||  ||| ||||||| || ||||| || || ||||| |||||||| ||||| || ||||||||||| || ||||| || || |||||||| || ||   || |||   | |||| ||  |      |     | | | |  || |   |  ||  ||   ||  |  |  | |    |||    |  |     ||   
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaatggcca----atgggacaatattgtgcag--