1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGATGTGGTCTCCAAAGTCTGCATCTTCCTGCAAGAGAACAACAGACCTTTCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccatgcgacctcagttgtgtataagctctgaaacaaatgttcacaacacgtccttcagtaatgtgttgatgtttatctccaccaaaatcgattggccag
species | Zea mays |
transcript | GRMZM2G359397_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAG TGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGACEST: gi|211436233|gb|FL480979.1|FL480979
genomic: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccat ... gattggccagTGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGAC
EST: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAG TGCTATGCGGAGAAGCAGCTTCTCGGAAAGGCGAGCCAAGAGTTCCTCGACEST: gi|94472555|gb|EB701513.1|EB701513
genomic: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccat ... gattggccagTGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGAC
EST: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAG TGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGACEST: gi|31364173|gb|CD448528.1|CD448528
genomic: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccat ... gattggccagTGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGAC
EST: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAG TGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTCGACEST: gi|67017472|gb|CO446221.1|CO446221
genomic: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccat ... gattggccagTGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGAC
EST: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAG TGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTCGACEST: gi|24768733|gb|CA403862.1|CA403862
genomic: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccat ... gattggccagTGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGAC
EST: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAG TGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTCGACEST: gi|78119880|gb|DV538264.1|DV538264
genomic: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccat ... gattggccagTGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGAC
EST: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAG TGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGACEST: gi|76282139|gb|DV021707.1|DV021707
genomic: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccat ... gattggccagTGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGAC
EST: TCAATGTCCTCATTTCTGAATCTGGCAAGAGAATTTTCCTTCTCCCCCAG TGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGACEST: gi|211001655|gb|FL448344.1|FL448344
genomic: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccat ... gattggccagTGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGAC
EST: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAG TGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTCGACEST: gi|32866924|gb|CF006606.1|CF006606
genomic: TCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccat ... gattggccagTGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGAC
EST: GGCAAGAGAATTTTCCTTCTACCACAG TGCTATGCGGAGAAGCAGCTTCTCGGAAAGGCGAGCCAAGAGTTCCTCGAC
genomic: GGCAAGAGAATTTTCCTTCTACCACAGgtattcccat ... gattggccagTGCTATGCGGAGAAGCAGCTCCTCGGAAAGGCGAGCCAAGAGTTCCTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGTGGTCTCCAAAGTCTGCATCTTCCTGCAAGAGAACAACAGACCTTTCAATGTCCTCATCTCTGAATCTGGCAAGAGAATTTTCCTTCTACCACAGgtattcccatgcgacctcagttgtgtataagctctgaaacaaatgttcacaacacgtccttcagtaatgtgttgatgtttatctccaccaaaatcgattggccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA