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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGATGCTTCTGTCCCAACCATCATACTAAGGACCCGCCGTTCGTTGAGAGCTGTGCATTTTCACCCGCATGGCGCTCCATATCTTCTAACAGCAGAGgtagaaatatagaataacctgaggtctgcgcttatgttttcccttcaaatttcatgtttgctgtatgaatttacgcataacttcaatttcag

Basic information

species Zea mays
transcript GRMZM2G353548_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G353548_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g18820.1 (Oryza sativa), 5'ss of exon 8
AGATGATGCTTCTGTCCCAACCATCATACTAAGGACCCGCCGTTCGTTGAGAGCTGTGCATTTTCACCCGCATGGCGCTCCATATCTTCTAACAGCAGAGgtagaaatatagaataacctgaggtctgcgct----tatgttttcccttcaaatttcatgtttgctgtatgaatttacgcataacttcaatttcag----
|||||| ||| |||  |||||||| ||| |||| |||||||| ||  | |||||||| ||||||||||| ||||| |||||||||||||| || |||||||||||||||    |   ||| ||  |     |     |  || ||     | |||   |  |      || |       |  |  || |||| ||     
AGATGAGGCTGCTGCTCCAACCATTATATTAAGAACCCGCCGCTCACTAAGAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAGgtagaaataatatactccctcagtcccaaaatataacaacttctctacctacattctcttctcaaccaatcacaaccttcccacatttaattccacctgc

upper sequence: GRMZM2G353548_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G35370.3 (Glycine max), 5'ss of exon 7
AGATGATGCTTCTGTCCCAACCATCATACTAAGGACCCGCCGTTCGTTGAGAGCTGTGCATTTTCACCCGCATGGCGCTCCATATCTTCTAACAGCAGAGgtaga---aatatagaataacctgaggtctgcgcttatgttttcccttcaaatttcatgtttgctgtatgaatttacgcataacttcaatttcag
|| ||| || ||    ||||   |  |  | | |||    || ||  |  | ||||||||||||||||| |||| ||| ||||||||| |||| ||||||||  |   | |||          ||   ||   || |   ||    || | ||||    |||| |  |   | ||||    |  |  |       
AGGTGAAGCATCCTCTCCAATATTTGTGTTGAAGACAAAGCGCTCCCTTCGTGCTGTGCATTTTCACCCTCATGCCGCACCATATCTTTTAACTGCAGAGgtgaatcaactattatgcttttggaatgctattctgaatgttagtttttagattttccctttggttaacatacttacattgatgtgtag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|194717167|gb|FK934320.1|FK934320
EST:     GAGCTGTGCATTTTCACCCGCATGGCGCTCCATATCTTCTAACAGCAGAG                         GTTAATAATATAGAGTCTGCAGACTCACCGCTGACTCTGGCAAGATCATCT
genomic: GAGCTGTGCATTTTCACCCGCATGGCGCTCCATATCTTCTAACAGCAGAGgtagaaatat ... tcaatttcagGTTAATAATATAGAGTCTGCAGACTCACCGCTGACTCTGGCAAGATCATCT