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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacacacctgagttttctttacatgcaacagcgag

Basic information

species Zea mays
transcript GRMZM2G352837_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctg-acagcgga-atgcctt----tctcaaatt---ttgcgtgtctttctcaaaatgcaacacacctgagttttctttacatgcaacagcgag
| ||||||||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| || || ||||||||||||||  | ||  ||||||||||||| || | ||||  || | || | | ||| | |    || | | ||    ||| || |||| |     | |||      | | |||| ||    ||        ||
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgactttttttt--ttcaattattgtaattttttttgttctgtcttgtaaag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctgacagcggaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacac-acctgagttttctttac------atgcaacagcgag-------------
| | ||||||  | || |||||||| ||||| ||| | ||||||||||| |  || ||||| || || ||||||||| | ||||| ||  |||||||||||||||| | || |   || |    ||    ||| ||   |  |    | | |  |  || ||  | |  | |  |  | | | | |      |||   |    |              
ATTGTGAGCAATTGGGTGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAAGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaaacttgtttttctgttggtaatagacctcatttaattgagatattatccaatgtatttctgctgatgtatgttcctctaaataatatggaacag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 19
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctc----ttgctgacagcggaatgcct--ttctcaaattttgcgtgtctttctcaaaatgcaacacac------ctgagttttctttacatgcaacagcgag--
| | ||| ||  | || |||||||||||||| ||  | |||||||| ||||  || ||||| || || || |||||| ||||||| ||| |||||||||||||| |  |     ||  |   |  |   || ||  |   ||| |  |||   |  |       ||        |      || |  ||| ||| | || |   | ||   
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaactctttcatgtttttagaactgttttggctggtggacaagtgatgcaatttgtaaaggggatattgtctgctatcagctaatatttttttccctgaacttgggacag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgcgtg---tctttctcaaaatgca---------aca----cacctgagttttctttacatgcaacagcgag----
| | ||| ||  | || |||||||||||||| ||  | |||||||| ||||  || ||||| || || || |||||| ||||||| ||| |||||||||||||||| || |   |   |  | | ||  ||             |||    | ||   |||  | |         | |    || || |  ||| ||| |    ||    | |    
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattcct-tcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctct----tgctgacagcggaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacacacctg---agtttt--ctttacatgcaacagcgag---
| | ||| ||||| || || ||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | ||| ||||||| ||||| ||  |         ||     |  ||   ||   || |       |  ||||   |   | | |   || |    | ||||  ||||  || |      |     
ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaaacaatgtacatgacatcagttctccacacaaactattgcttttctagttttctatttacttttttaattttggctttttattctgtcttgtacag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctctt--gctgacagcggaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacacacctg---agtttt--ctttacatgcaacagcgag---
| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | ||| ||||||| ||||| ||  |     ||      |   |  ||  |     |       | |   | |  || | | |   || |    | ||||  ||||  || |      |     
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaagcaatgtacatgacaccagttctctacacaaactattgcttttcaagttctatttacttttctaattttggctttttattctgtcttgtacag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacac-acctgagttttctttac------atgcaacagcgag-------------
| | ||||||  | || |||||||| ||||| ||| | ||||||||||| |  || |||||||| || ||||||||| | ||||| ||  ||||||||||||||||  |     ||  |    ||    ||| ||   |  |   || | |  |   | ||  | |    | ||  | | | | |      |||   |    |              
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtatttctgctgatgtatgttcctctaaataatatggaacag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctg-acagcgga-atgcctt----tctcaaatt-------ttgcgtgtctttctcaaaatgcaacacacctgagttttctttacatgcaacagcgag-
| ||||||||| | || |||||||| ||||| ||| | ||||| ||||||||||| ||||| ||  | ||||||||||||||  | ||  ||||||||||||| || | ||||  || | || | | ||| | |    || | | ||       ||   ||| ||| |     | |||      | | |||| |||          |  |  
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacacacctgagttttctttacatgcaacagcgag
| ||||| ||| | || ||||| || || || ||| | |||||||| ||||| |||||||| ||  | |||||||||||||| || ||| ||||||||||||| ||||| ||  | | ||   ||   ||  ||  ||||||  |  | |||   | | |     |    | |  ||  |||  |  ||        
ATTCTGAACAGTTGGGTGTTGAGGCATGTATAAAACTGTTTGAGCAGTTCAAGTCTTATGAAGGATTATACTTTTTCTTGGGGTCATATTTGAGCTCCAGgta-tttcttttaataaaag--aaaaaactgactttaattttaagcattttttgtatattttcttatttttcaccttcattttgagacag-------