Sequence
atgc intronic sequence ATGC exonic sequenceGATGAAGTTTGTTGGTACTGATGAGTTGCCTGGACCAGCACCAACTCAACAGAGCTCCCAAATTGATCACTCTTTTCCCTTCCTTGAATCACTGAATGAGgtgaaatccattctgttgtgctgattcccttaataagccgtggtgtggtcatttctaatgttactgaaatttctgctattgtggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G350818_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 5'ss of exon 12
GATGAAGTTTGTTGGTACTGATGAGTTGCCTGGACCAGCACCAACTCAACAGAGCTCCCAAATTGATCACTCTTTTCCCTTCCTTGAATCACTGAATGAGgt-gaaatccattctgttgtgctgattc-ccttaataagccgtggtgtggtcatttctaatgtt-actgaaatttctgctattgtggcag
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GATGAAGTTTGTTGGCACTGATGAGTTGCCTGGACCAGCACCAACTCAACATAGCTCCCAAATTGATCACTCTTTTCCCTTCCTCGAATCACTCAATGAGgtagcagaacattctgcattcctaatttgtttctttaagctgtggtgtgattgttctggtttttcgttgaaatctctcctcatgtggtag
upper sequence: GRMZM2G350818_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA05G36070.2 (Glycine max), 5'ss of exon 15
GATGAAGTTTGTTGGTACTGATGAGTTGCCTGGACCAGCACCAACTCAACAGAGCTCCCAAATTGATCACTCTTTTCCCTTCCTTGAATCACTGAATGAGgtgaa-atccattctgttg-tgctgattcccttaataagccgtggtgtggtcatttctaatgttactgaa-atttctgctattgtggcag
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AATGAAATATGTAGCTGGCGATGATTTACCAGCTGTTACGCCTGCTCGAAATGACACTCGACTGAACCACTCTTTTCCTTTTCTTGAATCACTGAATGAGgtccataaccaacttgtgaatttcagggatactcaccaactttggaacgttacaatcaaatttaactttgcatttctgtgatc-tttcag
upper sequence: GRMZM2G350818_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G03550.1 (Glycine max), 5'ss of exon 16
GATGAAGTTTGTTGGTACTGATGAGTTGCCTGGACCAGCACCAACTCAACAGAGCTCCCAAATTGATCACTCTTTTCCCTTCCTTGAATCACTGAATGAGgt--gaaatccattctgttgtg----ctgattcccttaataagccgtggtgtggtcatttctaatgttactgaaatttctgctattgtggcag
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AATGAAATATGTGGCTGGCGATGATTTACCAGCTGTTACGCCTGCTCGAAATGACACTCGACTGAATCACTCTTTTCCTTTTCTTGAATCACTGAATGAGgtccataactaacttccttgtgaatttcagggatactcattacctttggaatgttaccatcaaatttaactttgaattttgtgagc-tttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33770943|gb|CF273237.1|CF273237EST: ATAGCTCCCAAATTGATCACTCTTTTCCCTTCCTTGAATCACTGAATGAG GTATTGGAAACAAACAGGGCAGAAGAATCTCACTGTCATGTGCACAGGATG
genomic: AGAGCTCCCAAATTGATCACTCTTTTCCCTTCCTTGAATCACTGAATGAGgtgaaatcca ... attgtggcagGTATTGGAAACAAACAGGGCAGAAGAATCTCACTGTCATGTGCACAGGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGAAGTTTGTTGGTACTGATGAGTTGCCTGGACCAGCACCAACTCAACAGAGCTCCCAAATTGATCACTCTTTTCCCTTCCTTGAATCACTGAATGAGgtgaaatccattctgttgtgctgattcccttaataagccgtggtgtggtcatttctaatgttactgaaatttctgctattgtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT