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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGGCATCTGAGATCCTTGGACACAAGGGCGGTCAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagctttaactatttttatttcactattactattactactgtag

Basic information

species Zea mays
transcript GRMZM2G348729_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 5'ss of exon 4
TAGGGCATCTGAGATCCTTGGACACAAGGGCGGTCAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagctttaactattttt---------atttcactat-----tactattactactgtag-------------------------
||||||  ||||||| |||||||| ||| | ||  |||||||||| ||||| ||||| |||||||| || ||||| || |||||||||||||||||||||||||| ||| |||||||||         |||| | | |     |||  || ||  |||                           
TAGGGCCGCTGAGATTCTTGGACATAAGCGTGGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttcactatttttttggccgtcattttaatgtgcatttacctttgctgatgttatgatttatgttgctgacattttcag

upper sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 4
TAGGGCATCTGAGATCCTTGGACACAAGGGCGGTCAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagctt----taactatttttatttc-actattactattact--actgtag----------------------------------------------------------------------------------------------------------------------
  | ||| | ||||| ||||| || ||| |||||  |||||| |||||||||||||||||||| ||||| || || ||||| ||||||||||| || || |||||| |    ||| ||| | |||||| | | ||  | ||  |  | |||                                                                                                                        
CCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctcttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctgataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccag

upper sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 4
TAGGGCATCTGAGATCCTTGGACACAAGGGCGGTCAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagctt----taactatttttatttca--ctattactattactactgtag----------------------------------------------------------------------------------------------------------------------
  | ||| | ||||| ||| | || ||| | |||  |||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||| |    ||| ||| | |||| |    | ||  | ||  |  | |                                                                                                                        
CCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAGTTAGTGCACCCAAATGACCATGTCAATAGATCACAGTCTTCAAATGATACATTCCCAACTgtaagcctcttgtaattatatatattcccgtttttttttgttgttgatatgtctcgccatctgtgtagtgcaactcttgatagactttcttaaactttgtttatccactgtacagctcttgtttaaagtattgatttctttttaatctatatttgtttacttctttccag

upper sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 4
TAGGGCATCTGAGATCCTTGGACACAAGGGCGGTCAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagctttaactatttttatttcactattactattactactgtag-----------------------------------------------------------------------------------------------
  | ||| | ||||| ||||| || ||| | ||| |||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| || ||||||||| |    || |  ||| |  | |    ||||  |    | |                                                                                               
CCGAGCAGCAGAGATTCTTGGCCATAAGCGTGGTGAGAAGTTTGTGCACCCAAATGACCATGTCAATAGATCACAGTCTTCTAATGATACATTCCCAACTgtaagcctcttgtaatgatatgttcccaaatttattgttgaattggttcactgtcaatggtgtacaattcctgatgaattgttttcctactgtgttacctggtatacaatttttaatctatatttgtttacttctttccag

upper sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT5G50950.3 (Arabidopsis thaliana), 5'ss of exon 3
TAGGGCATCTGAGATCCTTGGACACAAGGGCGGTCAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagctttaact---atttttatttcactattactattactactgtag------------------------------------------------------------------------------------------------------------------------
||| ||| ||||||| ||||| |||||  | ||| | ||  ||||||||||||||||||||||||| || ||||||||||| ||||| || ||||| |||||||||||||  |   ||| | |||     ||||| | || |  || |                                                                                                                         
TAGAGCAGCTGAGATTCTTGGTCACAAACGTGGTGAAAAAATTGTGCACCCAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagctttagtttgcattctcatta-gtcattaccaataattttgcatgcttaacgttcattcaattgcttacggtgttcgtgtaaccgattgcttttatttcctatatgtatgctcactgctctgtcaagtactacttgacggtcgtataattttggttttgtatag

upper sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT2G47510.2 (Arabidopsis thaliana), 5'ss of exon 5
TAGGGCATCTGAGATCCTTGGACACAAGGGCGGTCAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagctttaact-atttttatttcactattactatt-ac-tactgtag------------------------------------------------------------------------------------------
||| ||| ||||||| ||||| | |||  | ||| |||| | |||||||||||||||||||||||| || ||||||||||| || || || ||||| || ||||||||| | |    ||      || | |||| || || | || ||                                                                                           
TAGAGCAGCTGAGATTCTTGGTCGCAAACGTGGTGAGAAATGTGTGCACCCAAATGACCATGTGAACAGATCACAATCTTCTAACGACACTTTTCCTACCgtaagctttcatttgcattccagctaccaatactttttacatgctttaagtttttaaaatttttctttcttatatgttggctcacttccctttcaacttctaattgacggtcttttttttttttttggcttttgtctag

upper sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0060g01700.t01 (Vitis vinifera), 5'ss of exon 2
TAGGGCATCTGAGATCCTTGGACACAAGGGCGGTCAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagctttaactatttttatttcactattactattact--actgtag-----------------------------------------------------
||| ||| ||||||| ||||| |||||  | ||| | ||||| |||||||||||||| ||||| || || |||||||| |||||||| |||||||| || |||||   |   | |  | ||   | | |||  | | |   | |||                                                       
TAGAGCAGCTGAGATTCTTGGCCACAAACGGGGTGAAAAGTTCGTGCACCCAAATGATCATGTCAACAGATCACAATCATCAAATGACACATTTCCGACAgtaagtgcttggtgtcct-atgggaattttagaacttcagaaatgtgagtgggtctttctaatactagtaaattcaactactgtaccttttaaagatatag

upper sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 5
TAGGGCATCTGAGATCCTTGGACACAAGGGCGGTCAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagctttaactatttttatt-tcactattactattactactgtag------------------------------------------------------------------------------------
||| ||| ||||||| ||||| ||  || | ||| | || | |||||| |||||||||||||| || || ||||||||||| ||||||||||| || ||||||||| ||    |     ||   ||  |||  ||  |  ||| |                                                                                      
TAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAATATGTGCATCCAAATGACCATGTTAACAGATCACAATCTTCTAATGATACATTCCCTACTgtaagccttttgaacaagaatagccatgatttttaagataactatctacttaaatggcttgacccatttcattgttgaaatgatgattttttactggtttttattgaattctatgtttgttgtttgtccag