1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAAAGATGACTTCTTTGATTCACTCTCTTGCAACCAAATTGACAATGGAGGGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacagataggcattgaatctttaccttcccatatcaccttagcattcagtgcatatcatgatttattttggctgtag
species | Zea mays |
transcript | GRMZM2G341027_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACCGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGCCEST: gi|60400104|gb|DN232911.1|DN232911
genomic: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
EST: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGCEST: gi|71758214|gb|DR956151.1|DR956151
genomic: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
EST: GGAGGAACGGAAGAGTGAAATTCTTTGAGCAGAGGAAAATAGACACTGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGCEST: gi|89759798|gb|DY688500.1|DY688500
genomic: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
EST: GGAGGAACGGAAGAGTGAAATTTTCTGAGCAGAGGAAAATAGACACTGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGCEST: gi|6672203|gb|AW282376.1|AW282376
genomic: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
EST: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGCEST: gi|78122711|gb|DV541095.1|DV541095
genomic: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
EST: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGCEST: gi|32929790|gb|CF034602.1|CF034602
genomic: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
EST: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGCEST: gi|91867336|gb|EB399648.1|EB399648
genomic: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
EST: GGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGCEST: gi|67016342|gb|CO445091.1|CO445091
genomic: GGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
EST: GGAGGAACAGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGCEST: gi|91055346|gb|EB165764.1|EB165764
genomic: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
EST: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGCEST: gi|211276411|gb|FL461470.1|FL461470
genomic: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
EST: GGAGGAACGGAAGAGTGAAATTCTYTGAGCAGAGGAAAATAGACACTGAG ACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
genomic: GGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacag ... ttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCGAGGTAGGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAGATGACTTCTTTGATTCACTCTCTTGCAACCAAATTGACAATGGAGGGAGGAACGGAAGAGTGAAATTCTCTGAGCAGAGGAAAATAGACACTGAGgtattcacagataggcattgaatctttaccttcccatatcaccttagcattcagtgcatatcatgatttattttggctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA