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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCACTAGTTGTTGGCAGGCCAATACTACTTGCACTGGAAGATATAGATGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATGgtaggaccaaccaatgttcattgtcaccaaagtttggaacctggtgcactttactgttacaaatattttatttgaagtatgaatattttcttgcag

Basic information

species Zea mays
transcript GRMZM2G340359_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G340359_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g46450.1 (Oryza sativa), 5'ss of exon 7
AAATCACTAGTTGTTGGCAGGCCAATACTACTTGCACTGGAAGATATAGATGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATGgtaggaccaaccaatgttcattgtcaccaaagtttggaacctgg---tgcactttactgttacaaatattttatttgaagtatgaatattttcttgcag
|||||| | |||||||| ||||| || || ||||||||||||||||| |||||||| |||||||| || |||||||||||| |||| ||||||| |||||||| |   || || ||||| || |||   |    || |    |    ||| ||  ||   | |||| | ||  || ||| | |||||||||  || |||
AAATCATTGGTTGTTGGTAGGCCGATTCTTCTTGCACTGGAAGATATTGATGGCAGCCCTTCTTTCCTAGAAAAAGCTTTGCGTTTTCTTGAGAGACATGgtatggataatcattgttcgttatcagttatcaatgaagttcgaaaatgc-ctgaacccatccaaaaaattgtttggaaatgtgaatatttcttt-cag

upper sequence: GRMZM2G340359_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S271_62V6.1 (Physcomitrella patens), 5'ss of exon 7
AAATCACTAGTTGTTGGCAGGCCAATACTACTTGCACTGGAAGATATAGATGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATGgtaggaccaaccaatgttcattgtcaccaaagtttggaacctggtgcactttactgttacaaatattttatttgaagtatgaatattt-tcttgcag---------------------------------
|| || || ||  |||||||||||||| |||||||  | |||||||| ||||| |||||||| || ||||| |||||| |   |||  |||| |   |||||| ||      | | |||  | |   || | |||  ||    || |||   | | |  |||  || ||  |    ||   || |    ||  ||                                   
AAGTCTCTTGTCATTGGCAGGCCAATATTACTTGCTTTAGAAGATATCGATGGAAGTCCTTCCTTCCTGGAGAAAGCTCTTACTTTTATTGAAACCTATGgtatgat-----attattctgt-tgggcatactttaaaatacagttcacagaattataccaagcatcttcatctctgtgaaaaaaccgatcgagcgttcctgatcctaatatagttattcatgtcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32850269|gb|CD989950.1|CD989950
EST:     TGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATG                         GAATAAAGGTGGAAGGAATTTTGCGTCAAGCTGCANATGTGGAGGAGGTTG
genomic: TGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATGgtaggaccaa ... tttcttgcagGAATAAAGGTGGAAGGAATTTTGCGTCAAGCTGCAGATGTGGAGGAGGTTG