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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctctatcttatactggagtattaatttttctgcttctaagcatgttttccagctggcatacgagtgtgcttgctaagcattattatgattcatt...

Basic information

species Zea mays
transcript GRMZM2G330650_T01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71774532|gb|DR972410.1|DR972410
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|60396385|gb|DN229254.1|DN229254
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|32866170|gb|CF005852.1|CF005852
EST:     CACAAACTGTTGTTTTTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|71774531|gb|DR972409.1|DR972409
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCC
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|50338100|gb|CO533226.1|CO533226
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|76286033|gb|DV025601.1|DV025601
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|21810005|gb|BQ668323.1|BQ668323
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|71442678|gb|DR823728.1|DR823728
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|60396054|gb|DN228924.1|DN228924
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|211141939|gb|FL417378.1|FL417378
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|87157738|gb|DY402527.1|DY402527
EST:     ACAAACTGTTGAGACTGGAGCTCAAACTTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: ACAAACTGTTGAGACTGGAGCTCAAAC-TGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|89754547|gb|DY685289.1|DY685289
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGGGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCC
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|7135269|gb|AW498001.1|AW498001
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|7135591|gb|AW498164.1|AW498164
EST:     AAACTGTTGAGACTGGAGCTCAAACTGCTGCGCCATTAACNCAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: AAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|18166041|gb|BM335880.1|BM335880
EST:     AGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: AGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|78074383|gb|DV502817.1|DV502817
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|78122352|gb|DV540736.1|DV540736
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|60337886|gb|DN204859.1|DN204859
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|110510919|gb|EE019261.1|EE019261
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|148961350|gb|EE012080.2|EE012080
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: gi|76019098|gb|DT946268.1|DT946268
EST:     CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA                         ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctctatcttatactggagtattaatttttctgcttctaagcatgttttccagctggcatacgagtgtgcttgctaagcattattatgattcatt

- - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - -  TGCTGC