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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCATAATATATACTGCAACCATTGGTGACATAGTTGATGGAACTGACACAACTCATGATTTCAACTATTTCTCGTTAGTCTATGAATGGCCAAAAGATgtaagatgtattctgtaccttctattcgatgttttttttcttgtattcatacgttgaatcttgaatgagaatcaacatattcacaaatttaaattgatat...

Basic information

species Zea mays
transcript GRMZM2G327311_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G327311_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g40990.3 (Oryza sativa), 5'ss of exon 15
CTTCATAATATATACTGCAACCATTGGTGACATAGTTGATGGAACTGACACAACTCATGATTTCAACTATTTCTCGTTAGTCTATGAATGGCCAAAAGATgtaagatgtattctgtaccttctattcgatgtttt----ttttcttgtattcatacgttga-atcttgaatgagaatcaacatattcacaaatttaaattgatat
 ||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||| |||| |||||||||||   | | |  |   ||  ||   ||||| |    |    |   ||  |||| ||   |  || ||||    ||  | | ||   |     || |||| | 
TTTCATAATATATATTGCAACCATTGGTGACATAGTGGATGGAACTGATACGACTCATGATTTCAACTACTTCTCCTTAGTCTATGAAAGGCCCAAAGATgtaagccatttacaat--tttacatatcatgttctgaagtcagatcaaatctatacattttcacttttaatgtttttc--cttctttgtactggaaacttgaaa-

upper sequence: GRMZM2G327311_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT2G25730.2 (Arabidopsis thaliana), 5'ss of exon 14
CTTCATAATATATACTGCAACCATTGGTGACATAGTTGATGGAACTGACACAACTCATGATTTCAACTATTTCTCGTTAGTCTATGAATGGCCAAAAGATgtaagatgtattctgtaccttctattc--gatgttttttttcttgtattcatacgttg--aatcttgaatgaga-atcaacatattcacaaatttaaattgatat
 || ||  | ||||||||  | |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||  | || ||||||||||| ||||| |||||   |  | | |    | |  ||  ||| |||||  | |    |   | | |||  | || ||  || |  || | | | || |     ||  |||     
GTTTATCCTCTATACTGCTGCTATTGGTGATATAGTAGATGGAACTGACACAACCCATGATTTCAACTTTTTCTCTCTTGTTTATGAATGGCCTAAAGACgtaagtgtttctttttttgatgttctcaggatatttttcatataaactctcttccttgtcattcatgcttgtggtattatcctcttaatctgcttttatt-----