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TCAAATCAACATTGGATGTGCTAGAGTTGATGGAAATTGGGCAAACAAATAGAGCAGTTGGATCGACAGCTCTGAATGAAAGGAGCAGTCGATCTCACAGgtatattcatcggcgccctgccctaacttctcttccacaaccttgaatttcaatatattcattaatttcatactttgatagtaaaataagcataatggaa...
species | Zea mays |
transcript | GRMZM2G323622_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGAGCAGTTGGATCGACAGCTCTGAATGAAAGGAGCAGTCGATCTCACAG CATTCTAACTGTGCATGTTAGAGGGGTGGATTTGAAGAATGGATCTACTTCEST: gi|211353939|gb|FL310943.1|FL310943
genomic: AGAGCAGTTGGATCGACAGCTCTGAATGAAAGGAGCAGTCGATCTCACAGgtatattcat ... ttgcatgcagCATTCTAACTGTGCATGTTAGAGGGGTGGATTTGAAGAATGGATCTACTTC
EST: AGAGCAGTTGGATCGACAGCTCTGAATGATAGGAGCAGTCGATCTCACAG CATTCTAACTGTGCATGTTAGAGGGGTGGATTTGAAGAATGGATCTACTTCEST: gi|38687291|gb|CK144322.1|CK144322
genomic: AGAGCAGTTGGATCGACAGCTCTGAATGAAAGGAGCAGTCGATCTCACAGgtatattcat ... ttgcatgcagCATTCTAACTGTGCATGTTAGAGGGGTGGATTTGAAGAATGGATCTACTTC
EST: AGAGCAGTTGGATCGACAGCTCTGAATGAAAGGAGCAGTCGATCTCACAG CATTCTAACTGTGCATGTTAGAGGGGTGGATTTGAAGAATGGATCTACTTCEST: gi|211133186|gb|FL313064.1|FL313064
genomic: AGAGCAGTTGGATCGACAGCTCTGAATGAAAGGAGCAGTCGATCTCACAGgtatattcat ... ttgcatgcagCATTCTAACTGTGCATGTTAGAGGGGTGGATTTGAAGAATGGATCTACTTC
EST: AGAGCAGTTGGATCGACAGCTCTGAATGAAAGGAGCAGTCGATCTCACAG CATTCTAACTGTGCATGTTAGAGGGGTGGATTTGAAGAATGGATCTACTTC
genomic: AGAGCAGTTGGATCGACAGCTCTGAATGAAAGGAGCAGTCGATCTCACAGgtatattcat ... ttgcatgcagCATTCTAACTGTGCATGTTAGAGGGGTGGATTTGAAGAATGGATCTACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAATCAACATTGGATGTGCTAGAGTTGATGGAAATTGGGCAAACAAATAGAGCAGTTGGATCGACAGCTCTGAATGAAAGGAGCAGTCGATCTCACAGgtatattcatcggcgccctgccctaacttctcttccacaaccttgaatttcaatatattcattaatttcatactttgatagtaaaataagcataatggaa
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataag