Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaagagacactaacttattgtacttgagtatttcctttaatcttgtctgttgctaatatcattgtcttcaatactgtag

Basic information

species Zea mays
transcript GRMZM2G322090_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G322090_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g41230.2 (Oryza sativa), 5'ss of exon 6
---GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaagagacactaactt-attgtacttgagtatttcctttaatcttgtctgttgctaatatcattgtcttcaatactgtag
   |||||||||||| || || ||  | |||||||| ||||| |||||| | ||||||||||||||||| ||||  ||   ||||||||||  ||| ||||  ||||||| ||||  |||  || |||||   | | ||||||  |     ||  |||| |||| ||  | | | ||| | |||
CATGGAAACAGTTCTATCGACTCGAGAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTAATTCGCAC---TGAGCCTGGTCAGGAATTAGCTgtaagagccactctctttgttttacttcctt-tctcctttgttacgtgctactgctcatataatcct-tgctatattatag

upper sequence: GRMZM2G322090_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G39080.1 (Glycine max), 5'ss of exon 12
GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTG-GTATGGACTTAGGGgtaagagac-actaacttattgtacttgagtatttcct-----ttaatcttgtctgttgctaatatcattgtcttcaatactgtag
 || || |||||    || || || |||||||| ||||| |||||| | |||||||||||||||||||| |  |  |||||  |||  | || | || |||  |  | |  | ||  | | | || ||    | || ||     | || | | | | || |  |||| | |   ||      || ||
TGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGgtcagcaaattaatatttaactttattttctcactttctaattttaaaccatttttttttcatatattaattattttttccttgcag

upper sequence: GRMZM2G322090_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G28740.2 (Glycine max), 5'ss of exon 4
GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTG-GTATGGACTTAGGGgtaagagacactaactta---ttgtacttgagtatttcctttaatcttgtctgttgctaatatcattgtcttcaatactgtag
 || || |||||    || || || |||||||| ||||| |||||| | |||||||||||||||||||| |  |  |||||  |||  | || | || |||  |  | |     | |||   || |  || | | | |  ||||| |     | || |  |||| | |   ||   |  || ||
TGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGgtcagcaaattaatatttaactttatttttcactttctaatttaaaccatgttttttcatatattaattctttttttcttgcag

upper sequence: GRMZM2G322090_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT3G22760.1 (Arabidopsis thaliana), 5'ss of exon 6
GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaagaga---cactaacttattgtacttgagtatttcctttaatcttgtct-gttgctaatatcattgtcttcaatactgtag-----
 ||    || ||| |||| ||  ||||||||||||| ||||||||| | ||||||||||||||||||||    |  || ||  |    || ||  | || ||||| |    || ||  |  || ||||| |  ||   |  ||   || |||  |||  ||    ||    |||   | ||        
AGATGTTGTCCTGGCTACTCGCAAACAGATTGAATCCCGCAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAACTCAGATTCCATCATTGAAGTTGGTgtaagtgttctcaatatttccttttactt-atcatcctcaatacatttatctcattgaaaaggctataaaattctgcattggttcacag

upper sequence: GRMZM2G322090_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT3G22780.1 (Arabidopsis thaliana), 5'ss of exon 6
GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaagagacactaacttattgtacttgagtatttcctttaatcttgtctgttgctaa-tatcattgtcttcaat-actgtag-------------------------
 ||||| ||| || |||| ||  ||||||||||||| || |||||| | ||||||||||||||||||||    |   | ||  |    |||||     | ||||||| | ||    ||||  |  |   |||| ||      |    |  |  || | | ||  |||| || || | | ||                          
AGAAACTGTTTTGGCTACCCGCAAACAGATTGAATCCCGAAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAATGCAGATTCCATCATGGAAGCTAGTgtaagag-ctct---ctattccatctttttattccccccccccccccccctctctcactctctctgtcctccattaatctaagggatgacatcgttatcttgcacag

upper sequence: GRMZM2G322090_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT4G14770.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaagagacactaacttatt-----gtacttgagtatt-tcctttaatcttgtctgttgcta--atatcattgtcttca-atactgtag
 ||    || ||| | || ||  |||||||||||||||| |||||| | |||||||||||||||||||||   |  |||||  | | |   ||    |||||| ||  |  |  |   |       | | |  | ||  ||| |  ||||||  ||  | ||  |||  |||||  | | | || |   
AGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCGGAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACTCTGACTCAGTTCAAGAAACCGGGgtaggattcttttccccgtcctttgattcctctgcatcatccatctatcttgcttgaagttataataatattgtaatgacacacag---

upper sequence: GRMZM2G322090_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv05s0020g03880.t01 (Vitis vinifera), 5'ss of exon 7
GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTG-GTATGGACTTAGGGgtaagagacactaact-tattgtacttgagtatttcctttaatcttgtctgttgctaatatcattgtc-ttcaatactgtag
 || || |||||  | || ||  | ||||| |||||||| |||||| ||||||||||||| ||||| |||   |  |||||  ||  |   | | || ||| || || | | |   |   ||||  ||    |     | | | || |   ||| |     | | ||   ||   |  || ||
AGATACTGTTCTTGCAACTCGCAAGCAGATCGAATCTCGGAATCCACTAGCATTTGCTCCCAAAGTGATTAGGAGCTCTGATTCTTTGCCGGAAGTTGGGgttaggacataattcttgccttgtgtttatacagaaaatctgaact-gctagttaccctgttaagtgaggttttctcttgcag

upper sequence: GRMZM2G322090_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0030g01800.t01 (Vitis vinifera), 5'ss of exon 6
GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaagagacactaacttattgta-cttgagtatttcc----tttaatcttgtctgttgctaatatcattgtcttc--aatactgtag
 || || || |||   || ||  ||||||||||||||||||| ||| | ||||||||||||||||| |||   |  |||||   || |   || || ||||||||| |   |  |  | |  |  || |||  |       |||     | | || |  | |   || ||| ||     |  || ||
AGACACTGTCCTGCAAACTCGTAAACAGATTGAATCTCGCAACCCACTTGCATTTGCTCCTAAAGTGATTAGAAGCTCTGATTATGTTCCAGAATTTGGGgtaagaaattatccccaactaaaattttagtgatctggtaatttgtcactctttgatcatgagtgcactgtttttttgctcatgcag

upper sequence: GRMZM2G322090_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S193_30V6.1 (Physcomitrella patens), 5'ss of exon 4
GGAAACAGTTCTGTCTACACGGCAACAGATTGAATCTCGCAATCCATTAGCATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaag---agaca----ctaacttatt-----gtacttgagtatttcctttaatcttgtctgttgctaatatcattgtcttcaatactgtag------------------
 |  |||||  ||   ||  | ||||| |||||||| ||||| ||||||||||||||||| ||  |  ||||  |  ||||  |   |     |   ||||||||   | |||    | || || |          | |  |||   || | ||||||| || |    || | |  ||  |    | ||||                   
AGCGACAGTCTTGAACACCAGACAACAAATTGAATCACGCAACCCATTAGCATTTGCTCCGAAGATTGTTCAGGCTCCTGAATCCTCTCCCATCCCTGGGgtaagtgtaaacaaaacccaagttgtctcctaacggtgggatatcaactatgatcttgt-tgataagcatgtgagcgttcttttaaatgtattgtgtactggttgcgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32937961|gb|CF042780.1|CF042780
EST:     CATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGG                         GACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAAT
genomic: CATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaagagaca ... aatactgtagGACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAAT
EST: gi|32932949|gb|CF037761.1|CF037761
EST:     CATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGG                         GACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAAT
genomic: CATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaagagaca ... aatactgtagGACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAAT