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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAAGTGCAGCAAAGAGGTGCTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctttggtcatcttgctttataaattagttacttatctacagttgcttaagtttcaatatttttgttggtatggctgctgctatactcccaagt...

Basic information

species Zea mays
transcript GRMZM2G316635_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G316635_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g44310.1 (Oryza sativa), 5'ss of exon 7
CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAAGTGCAGCAAAGAGGTGCTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctttggtcatcttgctttataaattagttacttatctacagttgcttaagtttcaatatttttgttggtat-ggctgctgctatactcccaagt----
 || | ||||||||||||||||||||| |||||| | || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   || |||| |||  |    ||||  ||    |  |  | | ||  |  || | |||| |        |   |||  ||   |||||   | |  ||     
TAGAAGGGCAACCCTTTGTGTCCATCCCGATAAACTACAACAAAGGGGTGCTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtacattatttgttcacatc---ttatgcatattcttgtggttttcatct--ttgaatttccacccccagttacttatcagcaattgctaattttcagagaagtt

upper sequence: GRMZM2G316635_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0001g12770.t01 (Vitis vinifera), 5'ss of exon 6
CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAAGTGCAGCAAAGAGGTGCTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctttggtcatcttgctttataaattag-ttacttatctacagttgct--taagtttcaatatttttgttggtatggctgctgctatact-cccaagt-
| ||||||| || |||||||| ||||| |||||  |||||||  | |||||||  ||    ||||| ||||| ||||||||||| ||||||||| |  |||| || |     ||  ||||  ||| |  ||||| |||  |||||  |   |||  | ||    || | |   |  | |     |  ||   || | || || | 
CCGGAAGGCCACTCTTTGTGTGCATCCTGATAAGTTGCAGCAGCGTGGTGCTAGCATTCAGCAGAAGTACATATGTGAGAAGGTTTTTGATCTTTTACAGgtatgct-----gttgtcttcttttgtgcattagcttaagtatctttatgggctagtgagcactaaaactgaagaggtttcaatttttgtagtaatgcctaaata

upper sequence: GRMZM2G316635_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAAGTGCAGCAAAGAGGTGCTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctttg---gtcatcttgctttataaattagttacttatctacagttgcttaagtttcaatatttttgttggtatggctgctgctatactcccaagt
 || || || || |||||||| ||||| || ||| | || ||||| ||||| |  ||   |||||| ||||| ||||| ||||| ||||||||||| |||||||||     |   | ||| ||  ||   ||| | | |   |   || |  ||  |||   | |  | ||      || |   |||   ||  |  | ||  
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaaattgatttctgattaaa--tgtctaatactta-cacttaaaactgtttccatgcctataggcctctaaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12969862|gb|BG266694.1|BG266694
EST:     CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAG                         GAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
genomic: CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctt ... gattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
EST: gi|21331195|gb|BQ486576.1|BQ486576
EST:     CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAG                         GAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
genomic: CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctt ... gattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
EST: gi|4775892|gb|AI664895.1|AI664895
EST:     CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAG                         GAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
genomic: CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctt ... gattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
EST: gi|22542028|gb|BU092466.1|BU092466
EST:     CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAG                         GAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
genomic: CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctt ... gattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
EST: gi|4624195|gb|AI615028.1|AI615028
EST:     AATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAG                         GAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
genomic: AATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctt ... gattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC