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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCACATCCCAGCAGACGGTATTGTGAAAGCTGGAAGGAGTACAGTTGATGAATCAAGTTTGACAGGTGAACCTATGCCTGTAACAAAGATAACAGGGgtacgaacaaatgttatctggcttgctgaattcaattaatatcccagtctagcatcgcattgtgctaaatgttgatgattcccctccttcgttag

Basic information

species Zea mays
transcript GRMZM2G315931_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G315931_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g37950.1 (Oryza sativa), 5'ss of exon 7
GATCACATCCCAGCAGACGGTATTGTGAAAGCTGGAAGGAGTACAGTTGATGAATCAAGTTTGACAGGTGAACCTATGCCTGTAACAAAGATAACAGGGgtacga----acaaatgttatctggcttgctgaattcaat-taatatcccagtctagcatcgcatt--------------gtgctaaatgttgatgattccc-----ctccttcgttag
||||   | |||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |        |      | |   |   | |  |  || ||  | ||   ||||||   |||||              | |||  ||  | ||| ||||      |  |||  ||||
GATCGTGTTCCAGCAGACGGTGTTGTCAAATCTGGACGGAGTACAGTTGATGAATCAAGTTTGACAGGTGAACCTATGCCTGTAACAAAGATAGCAGGGgtcagtttctgtgaccacgttataattccttaatgtggatatatcagccacatctagctaagcattagtatctatcgtgtgcgctgcataataatgtttccttgcttcctcttttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13237050|gb|BG355064.1|BG355064
EST:     ATGAATCAAGTTTGACAGGTGAACCTATGCCTGTAACAAAGATAACAGGG                         GCAGAAGTATCAGCAGGAAGTATTAACTTGAATGGTAAACTCACTGTTGAA
genomic: ATGAATCAAGTTTGACAGGTGAACCTATGCCTGTAACAAAGATAACAGGGgtacgaacaa ... ccttcgttagGCAGAAGTATCAGCAGGAAGTATTAACTTGAATGGTAAACTCACTGTTGAA