Sequence
atgc intronic sequence ATGC exonic sequenceGCATTCAACCGATCATGAAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagttgctcgatttgagtggcattctcactgtgtttttctgtggtatcgtaatgtcacactatacttggcaaaatgtaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G311165_T06 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 7
GCATTCAACCGATCATGAAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagttgctcgatttgagtggcattctcactgtgtttttctgtggtatcgtaatgtcacactatacttggcaaaatgtaacag
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GCATTCCACTGATCGTGAAGTTTCTATTATGATGCTCATGGCTTACTTGTCTTACATGCTTGCTGAAgtaagcaccctgtactattagcatc-atatagatcctgcagattt---gagcaatgtcagcta-aatttaattgtaatggataa---tctgatattaacctgtttcttttt-gtggcag-----------------------------------------------------------
upper sequence: GRMZM2G311165_T06 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 8
GCATTCAACCGATCATGAAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccctgtacttttaacctctgcagacattttgcattttttaa--aagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagttgctcgatttgagtggcattctcactgtgtttttctgtggtatcgtaatgtcacact-atacttggcaaaatgta-acag-----
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-------------------TGCTTGATTTGAGTGGTATTCTTACGGTGTTCTTCTGTGGTATTGTAATGTCGCACTATACCTGGCATAATGTAACAGAGAGTTCCAGGGTCACAACCAAgtaagtatctttatggtttgtttcagcaaacttattattccattttcatttttttaacttga-tg--atttcaaatatgtatttcc-tgaaattgtg-tatcacactgatgcttctctaattgtatactctatag
upper sequence: GRMZM2G311165_T06 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
GCATTCAACCGATCATGAAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAA-
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------------------------------------------------------TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttctaaacagatttcctcaagttatgta-cactgtccaagtctatgcatacctaaacatattttcacccaactcttg-cag----------
upper sequence: GRMZM2G311165_T06 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 9
GCATTCAACCGATCATGAAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagttgctcgatttgagtggcattctca-ctgtgtttttctgtggtatcgt--aatgtcacactatacttggcaaaatgtaacag
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------------------------------------TATGG--TATCTGAGTGGCATTCTCACTGTATTC--TTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGC----TCGAGAATAACTACCAA-
upper sequence: GRMZM2G311165_T06 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 9
GCATTCAACCGATCATGAAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagttgctcgatttgagtggcattctca-ctgtgtttttctgtggta-tcgtaatgtcacactatacttggcaaaa-----tgtaacag
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------------------------------------TATGG--TATCTGAGTGGCATTCTTACTGTATTC--TTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGC----TCGAGAATAACTACCAA-
upper sequence: GRMZM2G311165_T06 (Zea mays), 5'ss of exon 7
lower sequence: AT5G27150.1 (Arabidopsis thaliana), 5'ss of exon 10
GCATTCAACCGATCATGAAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccctgtacttttaacctctgca-gacattttgcattttttaaaagcaa--acatagc-tgtaaattgttattaacgggttgctttttta--ttgtaagttgctcgatttgagtggcattctcactgtgtttttctgtggtatcgtaatgtcacactatacttggcaaaatgtaacag
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-------------------------TTTTCGACTTGAGCGGTATCCTCACTGTGTTTTTCTGTGGTATTGTG----ATGTCCCATTACACATGGCACAATGTAACGGAGAGCTCAAGAATAACAACAAAgtatgcaaactttagtttctccgccttttgctgagattaacactttctacctcccaatgattatcttatgatttttttcgatgaaacag---------------------------------
upper sequence: GRMZM2G311165_T06 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
GCATTCAACCGATCATGAAGTTTCCATTATGATGCTA-ATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccctgtacttttaacctctgcagacattt-tgcattttt-taaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagttgctcgatttgagtggcattctcactgtgtt--tttctgtggtatcgtaatgtcacactatacttggcaaaatgtaacag
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-TATTCTATTTGA-GTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaac----attttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtc-tataaaatttccacag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149066754|gb|EE286897.2|EE286897EST: GCTAATGGCTTATTTATCTTACATGCTAGCTGAA AAAGTTCGAGGGTCACAACCAA
genomic: GCTAATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccc ... aatgtaacagAAAGTTCGAGGGTCACAACCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATTCAACCGATCATGAAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagttgctcgatttgagtggcattctcactgtgtttttctgtggtatcgtaatgtcacactatacttggcaaaatgtaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA