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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCTCATGTTTAATGGGAAGAGGATCCTTAACATCGAAGGCCCAAATGCTGATAGAACTATCAATACCCTCATATTCAACTCTTTTGTGTTTTGCCAGgtatgactagttcaagccaccttttctgatacctaatgcttgcaatttgtgaagctttgacattggcttactcagtagcagtaagtagcaaattcaacta...

Basic information

species Zea mays
transcript GRMZM2G305159_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 6
TACTCTCATGTTTAATGGGAAGAGGATCCTTAACATCGAAGGCCCAAATGCTGATAGAACTATCAATACCCTCATATTCAACTCTTTTGTGTTTTGCCAGgtatgactagttcaagccaccttttctgatacctaatgcttgcaatttgtgaagctttgacattggcttactcagtagcagtaagtagcaaattcaacta----
|||||| ||| ||| ||| ||||   ||||||  || ||||| ||  |  |||||| ||| |||||||| ||||||||||||||||| || ||||||||||||||   | | |||| | | ||| |    |   ||||  |  | |||||     ||    || |  ||  |   |    | |  |  ||| |||   ||    
TACTCTAATGGTTATTGGAAAGAAACTCCTTAGTATTGAAGGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGTCTTTTGCCAGgtatgtgaactacaagtcccttttacatgca---aatgagtcaattttgttgtttttgtctatggattttatttatgtttg-atatttcaagttctcatattat

upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA12G01360.1 (Glycine max), 5'ss of exon 7
TACTCTCATGTTTAATGGGAAGAGGATCCTTAACATCGAAGGCCCAAATGCTGATAG---AACTATCAATACCCTCATATTCAACTCTTTTGTGTTTTGCCAGgtat--gactagttcaagccaccttttctgatacctaatgcttgcaatttgtgaagctttgacattggcttactcagtagcagtaagtagcaaattcaacta
   |||||  |||  ||| ||   ||| || ||  || | || ||  ||| || ||    |  | |||||||| ||||||||||| | ||||| ||||||||||||   ||  |||                                                                                         
---TCTCAAATTTCGTGGCAAACAGATTCTCAAGCTCAATGGACCTGATGATGCTACCTTACTTCTCAATACCGTCATATTCAACACCTTTGTATTTTGCCAGgtaatagatcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--

upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G35970.1 (Glycine max), 5'ss of exon 6
TACTCTCATGTTTAATGGGAAGAGGATCCTTAACATCGAAGGCCCAAATGCTGATAG---AACTATCAATACCCTCATATTCAACTCTTTTGTGTTTTGCCAGgtat----gactagttcaagccaccttttctgatacctaatgct-tgcaatttgtgaagctttgacattggcttactcagtagcagtaagtagcaaattcaacta
   ||||| ||||  ||||||   ||| || ||| |  | || ||  ||| || ||    |  | |||||||| ||||||||||| | ||||| ||||||||||||     ||  |||| ||  ||   || |  ||   || |  | |   |||         | ||| |||| |   |   ||  |  |  || |   |||     
---TCTCAAGTTTCGTGGGAAACAGATTCTCAACCTTAATGGACCGGATGATGCTACCTTACTTCTCAATACCGTCATATTCAACACCTTTGTATTTTGCCAGgtaatatagatcagttaaattcagtcttgc--atttttatttttattttattctcccgttgtagaccttggatatatttttattaaaacatacctgtttctc---