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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtcttttgttctattttcccacattctaactctgaaatatttaaaaatataaccttagtgtcagctatattaacaagttgcattttggaatgaaa...

Basic information

species Zea mays
transcript GRMZM2G303631_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 5'ss of exon 7
GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtcttttgttctattttcccacattctaactctgaaatatttaaaaatataaccttagtgtcagctatattaacaagttgcattttggaatgaaa--
||||| |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||||||||||||||||||||||| | | ||  | |||     | | |     ||   | |   | | |||||| ||    || |||||||| |  |||| || ||   || |   | |  
GACACTTTCCGTGGTAGAGTGTGTGAATGCCCTACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatatttctttctgtatccatgctcgtatc--cttccatagtctcagaaatattactcctgtatcagctatgtctacaaattacaacatgcataaacaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32845726|gb|CD985407.1|CD985407
EST:     ACAATTCAAAGGCGATGGCTACAGCAATTGTGAAC                         CTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
genomic: ACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
EST: gi|211449604|gb|FL033165.1|FL033165
EST:     CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC                         CTGCTGGACCAGGAAAATGCTTGATAAACCAT
genomic: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCAT
EST: gi|32845732|gb|CD985413.1|CD985413
EST:     ACAATTCAAAGGCGATGGCTACAGCAATTGTGAAC                         CTGTTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
genomic: ACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
EST: gi|32843915|gb|CD983596.1|CD983596
EST:     ACAATTCAAAGGCGATGGCTACAGCAATTGTGAAC                         CTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
genomic: ACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
EST: gi|91054221|gb|EB164639.1|EB164639
EST:     CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC                         CTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
genomic: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
EST: gi|211449603|gb|FL033164.1|FL033164
EST:     CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC                         CTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
genomic: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
EST: gi|101394205|gb|EB819037.1|EB819037
EST:     CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC                         CTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
genomic: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
EST: gi|211449602|gb|FL033163.1|FL033163
EST:     CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC                         CTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
genomic: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA