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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGTGACTTGACTGCTACAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAGgtctatgtttagtctgaatagatattgaataaaccatatttttctttctgaggaaaaaagttgagacaacagttgatgctaatcactaagctagcatgtgcatttcatgaaaattgttgcttatccccatatattgcctaattggtctgaaagcatactgtgcttgtgatag

Basic information

species Zea mays
transcript GRMZM2G300862_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300862_T05 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 5'ss of exon 6
GGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGTGACTTGACTGCTACAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAGgtctatg-tttagtctgaatagatattgaataaaccatatttttctttctgaggaaaaaagtt-gagacaacagttgatgctaatcactaagctagcatgtgcatttcatgaaaattgttgcttatccccatatattgcctaattggtctgaaagcatactg-tgcttgtgatag
||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||| |  ||||| |||| |               ||||| || |      | |||| || ||| | ||||||     |  | | |    || ||||   |||   | |     |  |    ||       | | |||| || ||||||||||||||   ||| ||| ||||
GGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTAAAGCCCTGGGGTTGAGAGAAATTCAGgtccatggtgaagtctaaatata---------------attttgctcttcacaaacaaaaattagagcctacagtttgctattttaatttgtttatcatgctgattagcttagtggagcagaaagtc-------actacctactttgtctgaaagcataccactgcctgtcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89759013|gb|DY687973.1|DY687973
EST:     ACTTGACTGCTACAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAG                         GTATGGAAAGATGTTGATGGTGTACTTACTTGTGATCCAAATATCTACCCA
genomic: ACTTGACTGCTACAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAGgtctatgttt ... cttgtgatagGTATGGAAAGATGTTGATGGTGTACTTACTTGTGATCCAAATATCTACCCA