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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCATGCTGATGTTCAAAAGAGTTGTCAGAAGTTCATGACATCTGGTATTTATTATATCTTCTTTTGTAGTGGGCTGGTGTGGTCTGCTTAGCAGCAGgtaattttgctattgaaaattaatctattaccataagcttggtgactgaggtagacatttgatttatatttaatctaattgtttctctatgtgaatgtatacatataataacttag

Basic information

species Zea mays
transcript GRMZM2G300651_T03
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5668513|gb|AI932028.1|AI932028
EST:     TTTATTATATCTTCTTTTGTAGTGGGCTGGTGTGGTCTGCTTAGCAGCAG                         GTAGCACTACAACCAGCAATGTATGGATGAATTGAAGGTAGTAAAGAACGC
genomic: TTTATTATATCTTCTTTTGTAGTGGGCTGGTGTGGTCTGCTTAGCAGCAGgtaattttgc ... aataacttagGTAGCACTACAACCAGCAATGTATGGATGAATTGAAGGTAGTAAAGAACGC
EST: gi|50331719|gb|CO526845.1|CO526845
EST:     TTTATTATATCTTCTTTTGTAGTGGGCTGGTGTGGTCTGCTTAGCAGCAG                         GTAGCACTACAACCAGCAATGTATGGATGAATTGAAGGTAGTAAAGAACGC
genomic: TTTATTATATCTTCTTTTGTAGTGGGCTGGTGTGGTCTGCTTAGCAGCAGgtaattttgc ... aataacttagGTAGCACTACAACCAGCAATGTATGGATGAATTGAAGGTAGTAAAGAACGC
EST: gi|88748441|gb|DY532582.1|DY532582
EST:     TTTATTATATCTTCTTTTGTAGTGGGCTGGTGTGGTCTGCTTAGCAGCAG                         GTAGCACTACAACCAGCAATGTATGGATGAATTGAAGGTAGTAAAGAACGC
genomic: TTTATTATATCTTCTTTTGTAGTGGGCTGGTGTGGTCTGCTTAGCAGCAGgtaattttgc ... aataacttagGTAGCACTACAACCAGCAATGTATGGATGAATTGAAGGTAGTAAAGAACGC
EST: gi|76925579|gb|DV170488.1|DV170488
EST:     TTTATTATATCTTCTTTTGTAGTGGGCTGGTGTGGTCTGCTTAGCAGCAG                         GTAGCACTACAACCAGCAATGTATGGATGAATTGAAGGTAGTAAAGAACGC
genomic: TTTATTATATCTTCTTTTGTAGTGGGCTGGTGTGGTCTGCTTAGCAGCAGgtaattttgc ... aataacttagGTAGCACTACAACCAGCAATGTATGGATGAATTGAAGGTAGTAAAGAACGC