1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTATTTTCTGCTGCTGGACTCCCTCACAATGAAATTGCTGCTCAGATCTGTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatgtgtcctaactgcaaccctaccccctcccctacctacaaacatatttttcagagtacaaacagttgaacacacatctgcactcttaaaaaa...
species | Zea mays |
transcript | GRMZM2G181151_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAA-GCATGCAAAG GGTNGTGAAGATGACNAACTTGGCTATTGTGTTGGCTGCTATGGGAGTGAAEST: gi|211464049|gb|FL062020.1|FL062020
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGAC-AACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAA
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAG-AAAGCATGCAGAG GGTGGTGAAGATGANCA-CTTTGCTATTGTNGTT-GCTGCTATGGGAGTGAEST: gi|211045587|gb|FL062119.1|FL062119
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGA-CAACTTTGCTATTGT-GTTTGCTGCTATGGGAGTGA
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGGAAGCATGCAGAG GGTGGTGGAAGATGACAACTTTGCTATTGGGTTTGCEST: gi|32908718|gb|CF013531.1|CF013531
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTG-AAGATGACAACTTTGCTATTGTGTTTGC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|60352515|gb|DN219488.1|DN219488
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|32945519|gb|CF050338.1|CF050338
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCCGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|211469118|gb|FL062056.1|FL062056
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: TCGTCAGGCTGGCCTTGTGAAAGACAT-GGAGAAAG-AANGCATGCAGAG GGGGGTGAAGATGACAACTTTGCTAEST: gi|31360502|gb|CD444859.1|CD444859
genomic: TCGTCAGGCTGGCCTTGTGAA-GACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTA
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|32933270|gb|CF038082.1|CF038082
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|67028686|gb|CO457435.1|CO457435
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|26557381|gb|CA829616.1|CA829616
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|32944897|gb|CF049716.1|CF049716
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|211471640|gb|FL062065.1|FL062065
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|211461534|gb|FL062016.1|FL062016
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCTTTGTGAAGACATTGGAGAAAGGAAA-CATGCAGAG GGTGGTGAAAAATGACA-CTTTTGCAATTGTGTTEST: gi|32846162|gb|CD985843.1|CD985843
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGA-TGACAACTTT-GCTATTGTGTT
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|211045584|gb|FL062116.1|FL062116
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAA-GCATGCAGAG GGTGGTGAAGATGAEST: gi|32933397|gb|CF038209.1|CF038209
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGA
EST: GTCGTCAGGCTGGCCTTGTGAGGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|211464053|gb|FL062024.1|FL062024
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAA-GCATGCAGAG GGGTG-TGGAGATGACA-CTTTEST: gi|32942779|gb|CF047598.1|CF047598
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGG-TGGTGAAGATGACAACTTT
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|211332674|gb|FL416300.1|FL416300
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAA-GCATGCAGAG GGTGGTGA-GATGACAEST: gi|32931129|gb|CF035941.1|CF035941
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACA
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTATTTTCTGCTGCTGGACTCCCTCACAATGAAATTGCTGCTCAGATCTGTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatgtgtcctaactgcaaccctaccccctcccctacctacaaacatatttttcagagtacaaacagttgaacacacatctgcactcttaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA