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CCTATTTTCTGCTGCTGGACTCCCTCACAATGAAATTGCTGCTCAGATCTGTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatgtgtcctaactgcaaccctaccccctcccctacctacaaacatatttttcagagtacaaacagttgaacacacatctgcactcttaaaaaa...
species | Zea mays |
transcript | GRMZM2G181151_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|60352515|gb|DN219488.1|DN219488
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|32945519|gb|CF050338.1|CF050338
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCCGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|31360502|gb|CD444859.1|CD444859
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|32933270|gb|CF038082.1|CF038082
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|60394888|gb|DN227757.1|DN227757
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|67028686|gb|CO457435.1|CO457435
genomic: GCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|26557381|gb|CA829616.1|CA829616
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|32944897|gb|CF049716.1|CF049716
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|32846162|gb|CD985843.1|CD985843
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|32933397|gb|CF038209.1|CF038209
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAGGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|32942779|gb|CF047598.1|CF047598
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACEST: gi|32931129|gb|CF035941.1|CF035941
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTATTTTCTGCTGCTGGACTCCCTCACAATGAAATTGCTGCTCAGATCTGTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatgtgtcctaactgcaaccctaccccctcccctacctacaaacatatttttcagagtacaaacagttgaacacacatctgcactcttaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA