1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGACAATCACTAGCGCAGCGGCTTTGTTAAAGCAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagttggctttatcgaatgtacttctggttttggtattttttatggtcacatcctatatgatgtggcttcatctctgagcactttctaatattt...
species | Zea mays |
transcript | GRMZM2G180863_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|60341300|gb|DN208273.1|DN208273
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTATTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|149079722|gb|EE168724.2|EE168724
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|86465674|gb|DY232047.1|DY232047
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: TGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|71770133|gb|DR968070.1|DR968070
genomic: TGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|211094604|gb|FL027759.1|FL027759
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAWAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|149006975|gb|EE040194.2|EE040194
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|149004709|gb|EE039202.2|EE039202
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|50325134|gb|CO520260.1|CO520260
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|60358780|gb|DN225753.1|DN225753
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|32924137|gb|CF028949.1|CF028949
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: ACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|148947743|gb|EC893226.2|EC893226
genomic: ACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|91874827|gb|EB404784.1|EB404784
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGGGTCTTTGAGGAAGTTATTGTEST: gi|149088667|gb|EE177785.2|EE177785
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|211094605|gb|FL027760.1|FL027760
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCT-TATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|24769265|gb|CA404394.1|CA404394
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|31354391|gb|CD438748.1|CD438748
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAEST: gi|50339734|gb|CO534860.1|CO534860
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAA
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|6021970|gb|AW066898.1|AW066898
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: ATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|32929555|gb|CF034367.1|CF034367
genomic: ATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: ACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGTEST: gi|50322471|gb|CO517597.1|CO517597
genomic: ACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
EST: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAG CCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
genomic: CAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagt ... gacttttcagCCCTCCCGCGATTGAAAGGCTTTCTGGAGGCGTCTTTGAGGAAGTTATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACAATCACTAGCGCAGCGGCTTTGTTAAAGCAGGAGGGAGCAGAAGCTGTATATGCTTGTTGTACACATGCTGTTTTCAGgttttctagttggctttatcgaatgtacttctggttttggtattttttatggtcacatcctatatgatgtggcttcatctctgagcactttctaatattt
- - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT