1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCATCATGTGGAAGAGTCTCAGCAAGGAAAAAACTTTACATTCAAGTGTCACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatcttccttctataatatgttattcaaatggtttttaatctctctatcatattgaataaagttttgtgggtggaaacttcacaattccttgatgt...
species | Zea mays |
transcript | GRMZM2G180815_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|91875720|gb|EB405677.1|EB405677
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|88757959|gb|DY542100.1|DY542100
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|78073884|gb|DV502318.1|DV502318
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|88758075|gb|DY542216.1|DY542216
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|91873676|gb|EB403633.1|EB403633
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|50332449|gb|CO527575.1|CO527575
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|78107674|gb|DV526092.1|DV526092
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|71758084|gb|DR956021.1|DR956021
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTTTGATGGAAGTTTCAACTTTTGGEST: gi|74234227|gb|DT642141.1|DT642141
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGGACATTCGCTACTACAGGCTCTGATGGAAGTTTCA-CTTTTGGEST: gi|71432893|gb|DR813943.1|DR813943
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|71763057|gb|DR960994.1|DR960994
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTTTGATGGAAGTTTCAACTTTTGGEST: gi|29543837|gb|CB604217.1|CB604217
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|74240564|gb|DT648478.1|DT648478
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATEST: gi|76930213|gb|DV172299.1|DV172299
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGAT
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGATCTTTCATCCT GTGCATGGGACATTCGCTACTACAGGCTCTGATGEST: gi|76286199|gb|DV025767.1|DV025767
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATG
EST: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGGEST: gi|4624367|gb|AI615200.1|AI615200
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
EST: CCCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCT GTGCATGGTACATTCGCTACTACAGGCTTTGATGGAAGTTTCAACTTTTGG
genomic: ACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatctt ... ttctacccagGTGCATGGTACATTCGCTACTACAGGCTCTGATGGAAGTTTCAACTTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCATGTGGAAGAGTCTCAGCAAGGAAAAAACTTTACATTCAAGTGTCACCGCGATGGCAATGATATATACGCTATTAGCTCGTTGAACTTTCATCCTgtaagatcttccttctataatatgttattcaaatggtttttaatctctctatcatattgaataaagttttgtgggtggaaacttcacaattccttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaag