1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGATGAGGAAACTCTCCGTGAGGTTTTAGGTATGGGATATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttcttctgcattttgttgtcttcatccatctttttgtactgtaatggttgtgactggatcactggacttttatgtacag
species | Zea mays |
transcript | GRMZM2G180704_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAG GCAACTGTTGCATATTACTTACTCTTGEST: gi|211339633|gb|FL428844.1|FL428844
genomic: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttc ... ttatgtacagGCAACTGTTGCATATTACTTACTCTTG
EST: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAG GCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGTEST: gi|67022796|gb|CO451545.1|CO451545
genomic: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttc ... ttatgtacagGCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGT
EST: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAG GCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGTEST: gi|94477170|gb|EB706128.1|EB706128
genomic: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttc ... ttatgtacagGCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGT
EST: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAG GCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGTEST: gi|6994173|gb|AW453387.1|AW453387
genomic: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttc ... ttatgtacagGCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGT
EST: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAG GCAACTGTTGCTTATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGTEST: gi|116827763|gb|EC871704.1|EC871704
genomic: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttc ... ttatgtacagGCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGT
EST: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAG GCAACTGTTGCTTATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGTEST: gi|76015667|gb|DT942837.1|DT942837
genomic: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttc ... ttatgtacagGCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGT
EST: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAG GCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGTEST: gi|211368668|gb|FL393818.1|FL393818
genomic: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttc ... ttatgtacagGCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGT
EST: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAG GCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGTEST: gi|211092258|gb|FL379383.1|FL379383
genomic: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttc ... ttatgtacagGCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGT
EST: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAG GCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGT
genomic: ATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttc ... ttatgtacagGCAACTGTTGCATATTACTTACTCTTGGACAATAGGCTCCGTACAACCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGATGAGGAAACTCTCCGTGAGGTTTTAGGTATGGGATATGACAAGAACCTGTTGGTGGAATCAATCCAAAAAAGGCTGCAAAATGAGgtattatttcttctgcattttgttgtcttcatccatctttttgtactgtaatggttgtgactggatcactggacttttatgtacag
- - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA