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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGACAGACCGATGTAATCGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttgaatactactgctaattgttgttccacttcctgattgtgttgccgaaagctaaatctctacgacgacgacaacggcggcgatggcaccgcag

Basic information

species Zea mays
transcript GRMZM2G179737_T02
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32836771|gb|CD976449.1|CD976449
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAACCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTGGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|149110591|gb|EE190498.2|EE190498
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|71432608|gb|DR813658.1|DR813658
EST:     CGTCTTCTGTAGCGGCGGGGTCAAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTC
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTC
EST: gi|19350892|gb|BM895424.1|BM895424
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTT
EST: gi|19351534|gb|BM896066.1|BM896066
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGAC
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGAC
EST: gi|101390191|gb|EB817028.1|EB817028
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|60353776|gb|DN220749.1|DN220749
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGTTGCTTTCCCAGCTTGTGGACTTGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|83279335|gb|DV943343.1|DV943343
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|149021621|gb|EE045803.2|EE045803
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|148969450|gb|EE020256.2|EE020256
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|60358592|gb|DN225565.1|DN225565
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|149087736|gb|EE287093.2|EE287093
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|78087095|gb|DV515488.1|DV515488
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|211079592|gb|FK945962.1|FK945962
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|88758213|gb|DY542354.1|DY542354
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|32836777|gb|CD976455.1|CD976455
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAACCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|60398214|gb|DN231030.1|DN231030
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGTTGCTTTCCCAGCTTGTGGACTTGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|7216937|gb|AW563074.1|AW563074
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|78087096|gb|DV515489.1|DV515489
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|91048207|gb|EB158625.1|EB158625
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|60398588|gb|DN231404.1|DN231404
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGTTGCTTTCCCAGCTTGTGGACTTGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: gi|149110590|gb|EE294202.2|EE294202
EST:     CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG                         GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT