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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGATCTTTGCGTTTTGTTTGCAAGAGACAAAAGAAGCGCAGGGGAAGGATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTAATACAACTTAGAAGgtaatgtatgaaaagccaattgctgcaagtgatgtgttgctaactaaaaactagtgagtgtgggagttcttcactgaaagatcagctgcacgaaatgcat...

Basic information

species Zea mays
transcript GRMZM2G179097_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179097_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g41100.6 (Oryza sativa), 5'ss of exon 8
TTTGATCTTTGCGTTTTGTTTGCAAGAGACAAAAGAAGCGCAGGGGAAGGATGCCTTTTGCTTT-CATCAGGAAATCAATGG-CATTAATACAACTTAGAAGgtaa-tgtatg-aaaagccaattgctgcaagtgatgtgttgctaactaaaaactagtgagtgtgggagttcttcactgaaagatcagctgc-acgaaatg-cat-----
  |||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||| || |||||||||||  ||||||| | |||  |||| ||| || |  |||||||||| ||||| ||||||| ||  ||||||   | |          ||||||||  ||  | |||| | | |     
--TGATCTTTCCATTTTGTTTGCAAGAGACAAGAGAAGCGAAGGGGAAGGATGCCTTTTGCTTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAGgtaaatatattcaaaaaccatttacctcaagtgatgtattgctgactaaaa-ctgatgagtgcacgtgc--------aaaagatcatttgtgatgaaaggtcgtggttg

upper sequence: GRMZM2G179097_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g41100.2 (Oryza sativa), 5'ss of exon 9
TTTGATCTTTGCGTTTTGTTTGCAAGAGACAAAAGAAGCGCAGGGGAAGGATGCCTTTTGCTTT-CATCAGGAAATCAATGG-CATTAATACAACTTAGAAGgtaa-tgtatg-aaaagccaattgctgcaagtgatgtgttgctaactaaaaactagtgagtgtgggagttcttcactgaaagatcagctgc-acgaaatg-cat-----
                                 ||||||| ||||||||||||||||||||||| || |||||||||||||| || |||||||||||  ||||||| | |||  |||| ||| || |  |||||||||| ||||| ||||||| ||  ||||||   | |          ||||||||  ||  | |||| | | |     
---------------------------------AGAAGCGAAGGGGAAGGATGCCTTTTGCTTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAGgtaaatatattcaaaaaccatttacctcaagtgatgtattgctgactaaaa-ctgatgagtgcacgtgc--------aaaagatcatttgtgatgaaaggtcgtggttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113860167|gb|DW978517.1|DW978517
EST:     ATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTAATACAACTTAGAAG                         CTAAAGCTGTGGCTGCTTC
genomic: ATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTAATACAACTTAGAAGgtaatgtatg ... acgtctgcagCTAA-GCTGTGGCTGCTTC
EST: gi|113825496|gb|DW945395.1|DW945395
EST:     ATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTAATACAACTTAGAAG                         CTAAGCTGTGGCTGC
genomic: ATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTAATACAACTTAGAAGgtaatgtatg ... acgtctgcagCTAAGCTGTGGCTGC