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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTTGGCTGAACTAGAAGCACTTGATTGGGTCCTGTCCGTCCTAACTGTTATGCTTCACACTGAAATCCTGAGTTCATGAGGTTAGATATCTTCTGAGgtgaggtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcag

Basic information

species Zea mays
transcript GRMZM2G179097_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179097_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g41100.1 (Oryza sativa), 5'ss of exon 7
-------CTTTTTGGCTGAACTAGAAGCA-CTTGATTGGGTCCTGTCCGTCCTAACTGTTATGCTTCACACTGAAATCCTGAGTTCATGAGGTTAGATATCTTCTGAGgtgag--gtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcag
       |||||||||||| |||  |||| |||| |||||  || |   |||| ||||| |||| |||        | |||| |  ||||||| |||||   |||||||||||  |||||||||||||||||||||||  | ||| |||||||| ||||||||||||||||||||||||||
CCGTGGTCTTTTTGGCTGAGCTATTAGCAACTTGTTTGGGCTCTATTGATCCTGACTGTCATGCATCA--------TTCTGAATCTATGAGGTCAGATACACTCTGAGgtgagatgtgccatggacatgaagtatcacg-catcttggtgtctaccagcaactgatagtgttctttagcag

upper sequence: GRMZM2G179097_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g41100.3 (Oryza sativa), 5'ss of exon 7
------------------------CTTTTTGGCTGAACTAGAAGCA-CTTGATTGGGTCCTGTCCGTCCTAACTGTTATGCTTCACACTGAAATCCTGAGTTCATGAGGTTAGATATCTTCTGAGgtgag--gtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcag---------------------------------------------------------
                        |||||||||||| |||  |||| |||| |||||  || |   |||| ||||| |||| |||        | |||| |  ||||||| |||||   |||||||||||  |||||||||||||||||||||||  | ||| |||||||| ||||||||||||||||||||||||||                                                         
CAAGGGAACATTGGCAACCGTGGTCTTTTTGGCTGAGCTATTAGCAACTTGTTTGGGCTCTATTGATCCTGACTGTCATGCATCA--------TTCTGAATCTATGAGgtcagatacactctgaggtgagatgtgccatggacatgaagtatcacg-catcttggtgtctaccagcaactgatagtgttctttagcaggcatggtgctggtttaagttgataggtacctggcccatcatagaaattttgttgcag

upper sequence: GRMZM2G179097_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g41100.4 (Oryza sativa), 5'ss of exon 7
-------CTTTTTGGCTGAACTAGAAGCA-CTTGATTGGGTCCTGTCCGTCCTAACTGTTATGCTTCACACTGAAATCCTGAGTTCATGAGGTTAGATATCTTCTGAGgtgag--gtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcag
       |||||||||||| |||  |||| |||| |||||  || |   |||| ||||| |||| |||        | |||| |  ||||||| |||||   |||||||||||  |||||||||||||||||||||||  | ||| |||||||| |||||||||||||||||||||||   
CCGTGGTCTTTTTGGCTGAGCTATTAGCAACTTGTTTGGGCTCTATTGATCCTGACTGTCATGCATCA--------TTCTGAATCTATGAGGTCAGATACACTCTGAGgtgagatgtgccatggacatgaagtatcacg-catcttggtgtctaccagcaactgatagtgttctttag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31664322|gb|CD573047.1|CD573047
EST:     TATGCTTCACACTGAAATCCCTGAGTTCATGAGGTTAGATATCTTCTGAG                         GCTTGGTACCGGTTTAAATGGATAAGGTTTCTCCTTGTGGCCCATCATAGA
genomic: TATGCTTCACACTGAAAT-CCTGAGTTCATGAGGTTAGATATCTTCTGAGgtgaggtgcc ... tctttagcagGCTTGGTACCGGTTTAAATGGATAAGGTTTCTCCTTGTGGCCCATCATAGA