1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGAAACCCCAAGCGCCGAAGGGTCACGGCATCTGAGCCAGCGTGAGGCTGCACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaactaagtgcgcatttttatttcgatccgatttttatgccacctactaggacctgtgattcacgcttttacaatcatttgcag
species | Zea mays |
transcript | GRMZM2G179024_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|32832897|gb|CD972575.1|CD972575
genomic: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|110201884|gb|EC883781.1|EC883781
genomic: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|32833367|gb|CD973045.1|CD973045
genomic: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: CACTGANCAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|32833631|gb|CD973309.1|CD973309
genomic: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: GGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|211237343|gb|FL447339.1|FL447339
genomic: GGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: GAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|33098315|gb|CF058275.1|CF058275
genomic: GAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|211135211|gb|FL444569.1|FL444569
genomic: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|32835212|gb|CD974890.1|CD974890
genomic: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|211304182|gb|FL452363.1|FL452363
genomic: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|211273943|gb|FL428381.1|FL428381
genomic: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAGEST: gi|87155248|gb|DY400037.1|DY400037
genomic: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
EST: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAG GTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
genomic: CACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaact ... tcatttgcagGTTCGATACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAACCCCAAGCGCCGAAGGGTCACGGCATCTGAGCCAGCGTGAGGCTGCACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgtaagcaactaagtgcgcatttttatttcgatccgatttttatgccacctactaggacctgtgattcacgcttttacaatcatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG