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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGGGCTTCAAGGGGGGAGACGCCATCGCTCCAGACTCGTTGCTCACTGAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttcttctcattgaagtcgttttcaccctacgcctacgaagtcgattcttttcagttattattatatcttagttgtgcctgcagctcgaggcctgattaaactattcgtccgcactttttttgtttttgacag

Basic information

species Zea mays
transcript GRMZM2G178415_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178415_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g58040.1 (Oryza sativa), 5'ss of exon 7
TCAAGGGCTTCAAGGGGGGAGACGCCATCGCTCCAGACTCGTTGCTCACTGAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttctt---ctcattg-aagtcgttttcaccctac----gcctacgaagtcgattcttttcagttattattatatcttagttgtgcctgcagctcgaggcctgatt--aaact---attcgtccgcactttttttgtttttgacag
||||||| ||| | || || || || ||||  |||  |||  |||| |||||||| || || ||||||||||| ||||| ||||| ||||| |||||||||||   |||||   ||||||| |  | ||||   || |||    ||   | |  ||  |||| ||   | | | |||| |  | | | |  ||||| ||  |  |||| ||  ||||    |||  |||||||  | ||| |  | |    
TCAAGGGTTTCGACGGAGGCGATGCAATCGACCCACGCTCACTGCTTACTGAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAAgtactcttcttttcctcattgcatcttgtttcatccttacagtagcactcaacctcatttctgttttatcactgttatgtgcttgcttt-tctgcacctgcaaacctgtttgcaaacggtgattaatccgcaccatgttt-tcctag----

upper sequence: GRMZM2G178415_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 8
TCAAGGGCTTCAAGGGGGGAGACGCCATCGCTCCAGACTCGTTGCTCACTGAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttcttctcattgaagtcgttttcaccctacgcctacgaagtcgattcttttcagttattattatatcttagttgtgcctgcagctcgaggcctgattaaactattcgtccgcactttttttgtttttgacag
|||| || ||||| |||| |||  | || | |||| | ||  |  |   |||||| || |||||||||||||||||||| |||||||| || || |||| ||     ||||||||      ||  |||              |||||  | | || |   || || || | |  || || |   |||   ||      | ||  | || |   |                        
TCAAAGGTTTCAATGGGGCAGATCCAATAGATCCAAAGTCAATATTGGTTGAAGATTGTGACGTCCTCATCCCAGCAGCCCTTGGGGGTGTGATCAACAGgt-----tcttctcaccagcatctgttttgtt----------gaagttcactgttcttc-ttgttctt-tgttataatttttattgctattcagaaattaatagatctttatcttaa---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6851580|gb|AW352590.1|AW352590
EST:     CTCATCCCGGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: CTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|60344011|gb|DN210984.1|DN210984
EST:     GAAGAGTGCGACGTCCTCATCCCGGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCAAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|5343229|gb|AI795414.1|AI795414
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGG
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGG
EST: gi|71766898|gb|DR964835.1|DR964835
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|67040711|gb|CO466966.1|CO466966
EST:     GTGCGACGTCTTTC-TCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAATGCAAACTACATCATCGAGGCTGCCAATCA
genomic: GTGCGACGTC-CTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|6012198|gb|AW061740.1|AW061740
EST:     GAAGAGTGCGACGTCCTCATCCCGGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|148934217|gb|EC878238.2|EC878238
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|148981457|gb|EE027656.2|EE027656
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|148974520|gb|EE025306.2|EE025306
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|6993922|gb|AW453136.1|AW453136
EST:     GAAGAGTGCGACGTCCTCATCCCGGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|91053893|gb|EB164311.1|EB164311
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|78092009|gb|DV520383.1|DV520383
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|60394477|gb|DN227347.1|DN227347
EST:     ACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: ACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|211079581|gb|FL056327.1|FL056327
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|71426411|gb|DR807461.1|DR807461
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|211375022|gb|FL430803.1|FL430803
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|50330055|gb|CO525181.1|CO525181
EST:     TGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: TGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|86470639|gb|DY237009.1|DY237009
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|14243831|gb|BG841522.2|BG841522
EST:     TCCCAGCAGCGCTTGGGGAAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: TCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|74245082|gb|DT652996.1|DT652996
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|148934216|gb|EC878237.2|EC878237
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|78077525|gb|DV505959.1|DV505959
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|60357158|gb|DN224131.1|DN224131
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|71328973|gb|DR801176.1|DR801176
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|211079579|gb|FL056325.1|FL056325
EST:     GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GAAGAGTGCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
EST: gi|5847156|gb|AW000235.1|AW000235
EST:     GCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAA                         GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA
genomic: GCGACGTCCTCATCCCAGCAGCGCTTGGGGGAGTCATAAACAAgtagatttct ... tttttgacagGGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCA