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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGAATTCTGGATCCGCTATGTGCAATGTATGGAGGATAAAGGGAGTCTAGACCTAGCAAACAATGCCCTGGCTCGTGCTACTCATGTGTTTGTCAAGgtattatttcataactagtatggcaatgtgcttctaccactaaaactgtagggtgtatttggattcagaaaaggcaaactgtcagggcctaaggaggccc...

Basic information

species Zea mays
transcript GRMZM2G178294_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178294_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g11200.1 (Oryza sativa), 5'ss of exon 7
TTCAGAATTCTGGATCCGCTATGTGCAATGTATGGAGGATAAAGGGAGTCTAGACCTAGCAAACAATGCCCTGGCTCGTGCTACTCATGTGTTTGTCAAGgtattattt-cataactagtatggcaatgtgcttctaccactaaaactgtaggg-tgtatttggattcagaaaaggcaaactgtcagggcctaaggaggccc
|||||| || |||||||| ||||||| ||| ||||| | || ||| ||  |||| |||||||||||||| ||||||||||| |||||||| ||||||||||||| |  |  | |   |||||     |   ||| ||||| ||    | |     || |      ||    |  |      |||     | |       |  
TTCAGAGTTTTGGATCCGTTATGTGCTATGCATGGAAGCTAGAGGAAGCATAGAACTAGCAAACAATGCTCTGGCTCGTGCCACTCATGTTTTTGTCAAGgtatcacatatacagtcagtataat--ttaccttttaccattatgttttttctcctgcacacttttttgatatggatcttgtgtatatccttctatctacat

upper sequence: GRMZM2G178294_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv07s0005g04290.t01 (Vitis vinifera), 5'ss of exon 3
TTCAGAATTCTGGATCCGCTATGTGCAATGTATGGAGGATAAAGGGAGTCTAGACCTAGCAAACAATGCCCTGGCTCGTGCTACTCATGTGTTTGTCAAGgtatt--atttcataactagtatggcaatgtgcttct-accacta-aaactgtagggtgtatttggattcagaaaaggcaaactgtcagggcctaaggaggccc
| | || | |||||| || |||||   ||| |||||||  |  || ||  | || || |||||||||||||| |||||||||||||| || |||||||||||||   |||  ||   || ||||  |   || | || |  |||  |||     |    |  |  | |||  | || |   | | | |     |          
TCCCGAGTACTGGATACGATATGTTTTATGCATGGAGGCCAGTGGAAGCATGGATCTTGCAAACAATGCCCTTGCTCGTGCTACTCAAGTTTTTGTCAAGgtatggaattctatttttactatgcaatcttgatacttaaaactggaaatcaccgctcatgatctggttctaataatgttgagtttaaattattttcttc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211472098|gb|FL427752.1|FL427752
EST:     TAGACCTAGCAAACAATGCCCTGGCTCGTGCTACTCATGTGTTTGTCAAG                         AAGCAGCCGGAGATCCATCTGTTTAGTGCTCGCTTTAAGGAGCTTAATGGG
genomic: TAGACCTAGCAAACAATGCCCTGGCTCGTGCTACTCATGTGTTTGTCAAGgtattatttc ... tgtttcacagAAGCAGCCGGAGATCCATCTATTTAGTGCTCGCTTTAAGGAGCTTAATGGG
EST: gi|60399477|gb|DN232289.1|DN232289
EST:     TAGACCTAGCAAACAATGCCCTGGCTCGTGCTACTCATGTGTTTGTCAAG                         AAGCAGCCGGAGATCCATCTATTTAGTGCTCGCTTTAAGGAGCTTAATGGG
genomic: TAGACCTAGCAAACAATGCCCTGGCTCGTGCTACTCATGTGTTTGTCAAGgtattatttc ... tgtttcacagAAGCAGCCGGAGATCCATCTATTTAGTGCTCGCTTTAAGGAGCTTAATGGG
EST: gi|74240630|gb|DT648544.1|DT648544
EST:     TAGACCTAGCAAACAATGCCCTGGCTCGTGCTACTCATGTGTTTGTCAAG                         AAGCAGCCGGAGATCCATCTATTTAGTGCTCGCTTTAAGGAGCTTAATGGG
genomic: TAGACCTAGCAAACAATGCCCTGGCTCGTGCTACTCATGTGTTTGTCAAGgtattatttc ... tgtttcacagAAGCAGCCGGAGATCCATCTATTTAGTGCTCGCTTTAAGGAGCTTAATGGG