Sequence
atgc intronic sequence ATGC exonic sequenceGGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggctta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G177970_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 7
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaa--ttattaacagct--cattt------------------------------agctag----aataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctc---aatatgaacaatggctta---------
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GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatattactcgtggctattatttttctgggttgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgtt-atggttctgtttctctcctttctatgatgccaataatagctaatgattgcag
upper sequence: GRMZM2G177970_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G09240.2 (Glycine max), 5'ss of exon 3
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggctta-
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GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgattttttacccact-atcttgtggaaattttataagtccttgtatgtagtagtgaaagtaaaaaaacctaatgaataagctaatgttacttaatatga
upper sequence: GRMZM2G177970_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 7
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggctta--
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GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtga-tttttgacacactaccttgtgaaaatttata-agtccttgtatgtagtagtgaaagtaaaaaaaacctaatgaataagctaatgttacttaatatga
upper sequence: GRMZM2G177970_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 7
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggctta----
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GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgta---tacatacagttttatgtagtacaacttgctgaacattt-attcttttgggattcattatttggttctgtagacatgcctatacactcaagctcatataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76012104|gb|DT939274.1|DT939274EST: CACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAG CTCCAGCAGTAGTCTGTCTTTTACTGACAATTCATTTATACTTTTTGATTG
genomic: CACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattatt ... cgttttgcagCTCCAGCAGTAGTCTGTCTTTTACTGACAATTCATTTATACTTTTTGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaataaa