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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggcttacttgaatgatcacag

Basic information

species Zea mays
transcript GRMZM2G177970_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 7
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaa--ttattaacagct--cattt------------------------------agctag----aataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggcttacttgaatgatcacag
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||  ||| |    |||   ||||                              |||||     |||| ||| |   |  ||||||| || | || ||     ||||| |||| | || ||     ||||   |  ||  ||||||  |||
GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatattactcgtggctattatttttctgggttgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgtt-atggttctgtttctctcctttctatgatgccaataa-tagct--aatgattgcag

upper sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G09240.2 (Glycine max), 5'ss of exon 3
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggc-ttacttga-atgatcacag
|| |||||| | ||||||||||| |||||||||||||||||||| ||||||||||| || ||| | || ||||||| || ||| |  |     || || |   ||||   | |    | | |   ||||| || |        |     | |  |||    |   |    |||||| | ||||      
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgattttttacccac-----tatcttgtggaaattttata----agtcc--ttgtatgtagtagtgaaagtaaaaaaacctaatgaataagctaatgttacttaatatga------

upper sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 7
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggcttacttga-atgatcacag
|| |||||| | ||||||||||| |||||||||||||||||||| ||||||||||| || ||| | || ||||||| || || |||    |  | |  | |||  ||  |    ||  ||  ||  ||     |          |  | |       || | | |  | |||||| | ||||      
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtga-tttttgacacactaccttgtgaaaatttata-agtccttgtatgtagtagtgaaagtaaaaaaaacctaatga-------ataagctaatg-ttacttaatatga------

upper sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 7
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggcttacttgaatgatcacag
|| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||| || |||||    ||   |||| |   |    || ||       ||||||| | |      | ||| |||   | ||| |    |  |   |||  ||    ||| |  |            
GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgta---tacatacagttttatgtagtacaacttgctgaacattt-attcttttgggattcattatttggttctgtagacatgcctatacactcaagctcatata-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71449704|gb|DR830754.1|DR830754
EST:     CACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAG                         TCCGATCTGGTACCTGTTGGTGAAGATCAAACACAACATTTAGAATTAACT
genomic: CACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattatt ... atgatcacagTCCGATCTGGTACCTGTTGGTGAAGATCAAACACAACATTTAGAATTAACT
EST: gi|50331394|gb|CO526520.1|CO526520
EST:     CACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAG                         TCCGATCTGGTACCTGTTGGTGAAGATCAAACACAACATTTAGAATTAACT
genomic: CACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattatt ... atgatcacagTCCGATCTGGTACCTGTTGGTGAAGATCAAACACAACATTTAGAATTAACT
EST: gi|71449703|gb|DR830753.1|DR830753
EST:     ACTTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAG                         TCCGATCTGGTACCTGTTGGTGAAGATCAAACACAACATTTAGAATTAACT
genomic: AC-TTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattatt ... atgatcacagTCCGATCTGGTACCTGTTGGTGAAGATCAAACACAACATTTAGAATTAACT
EST: gi|76294199|gb|DV033767.1|DV033767
EST:     CACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAG                         TCCGATCTGGTACCTGTTGGTGAAGATCAAACACAACATTTAGAATTAACT
genomic: CACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattatt ... atgatcacagTCCGATCTGGTACCTGTTGGTGAAGATCAAACACAACATTTAGAATTAACT
EST: gi|78120428|gb|DV538812.1|DV538812
EST:     CACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAG                         TCCGATCTGGTACCTGTTGGTGAAGATCAAACACAACATTTAGAATTAACT
genomic: CACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattatt ... atgatcacagTCCGATCTGGTACCTGTTGGTGAAGATCAAACACAACATTTAGAATTAACT