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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTCTATGAAGACAATGAGTACGCACTCTACACCATAACACTTTTTGCTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAGgtaaggtttccttggacacattatgcttttttttttacattgatctggcaacccatctttagtcttttgccattcactaagtttcattcgctttgttccag

Basic information

species Zea mays
transcript GRMZM2G177912_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177912_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 7
ACAGCTCTATGAAGACAATGAGTACGCACTCTACACCATAACACTTTTTGCTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAGgtaaggtttccttggacacattatgcttttttttttacattgatctggca-acccatctttagtcttttgccattcactaagtttcattcgctttgttccag-------------------------------------------------------------------------------
| | || ||||| ||||||||||| || ||||||||  ||||| | ||||||||||||||||||||||||||||||||||| || || || |||||||||||||  || || |    || || |  |        |   || |     || |   | ||||  ||  | |    | |   |||| ||      |||   |||                                                                               
AAAACTTTATGAGGACAATGAGTATGCTCTCTACACGGTAACATTGTTTGCTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgccgtcctaactttttcatcaaaaacctttgtttacacttcacatttagcttttatccctagagccttag-gagttccaaataacttgggacagaaattcagtcttgtttttctgtccccatcaatctggcaattctctgtcacccattaacttgtattacgttgaaatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969237|gb|EE019991.2|EE019991
EST:     CTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAG                         GTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGTAGAAAGCAGGAG
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAGgtaaggtttc ... tttgttccagGTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGTAGAAAGCAGGAG
EST: gi|76288289|gb|DV027857.1|DV027857
EST:     ACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAG                         GTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGTAGAAAGCAGGAG
genomic: ACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAGgtaaggtttc ... tttgttccagGTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGTAGAAAGCAGGAG
EST: gi|60340364|gb|DN207337.1|DN207337
EST:     CTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAG                         GTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGTAGAAAGCAGGAG
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAGgtaaggtttc ... tttgttccagGTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGTAGAAAGCAGGAG
EST: gi|67016433|gb|CO445182.1|CO445182
EST:     CTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTNCAG                         ATTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGT
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAGgtaaggtttc ... tttgttccagGTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGT
EST: gi|40337132|gb|CK371202.1|CK371202
EST:     CTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAG                         GTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGTAGAAAGCAGGAG
genomic: CTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAGGGTTTCCAGgtaaggtttc ... tttgttccagGTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGTAGAAAGCAGGAG
EST: gi|71327561|gb|DR800389.1|DR800389
EST:     TAAGGTTGTTGACAACTTTAAAGGTCCGTGCTCGCGAGAAGGGTTTCCAG                         GTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGTAGAAAGCAGGAG
genomic: TAAGGTTGTTGACAACTTT-AAGGTCCGTGCTCGCGAGAAGGGTTTCCAGgtaaggtttc ... tttgttccagGTTCGTGATTTTGAGTATAGTCCTGAAGCACAAGAAAGTAGAAAGCAGGAG